Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_E24
(366 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal pr... 90 5e-19
U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical pr... 31 0.25
AF026202-2|AAB71242.2| 501|Caenorhabditis elegans Hypothetical ... 30 0.58
Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical pr... 29 0.77
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 28 2.4
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 28 2.4
Z93391-2|CAB07681.1| 490|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr... 26 7.2
AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math ... 26 7.2
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr... 26 9.5
U53147-3|AAM29659.1| 550|Caenorhabditis elegans Hypothetical pr... 26 9.5
U53147-2|AAA96114.2| 935|Caenorhabditis elegans Hypothetical pr... 26 9.5
U41547-5|AAX88831.1| 272|Caenorhabditis elegans C.elegans homeo... 26 9.5
>AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 17 protein.
Length = 130
Score = 89.8 bits (213), Expect = 5e-19
Identities = 44/69 (63%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Frame = +3
Query: 9 RNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQD---IIEVDSDTK 179
RNKIAG+ THLMRR+ VRGISIKLQEEERERRDNY+PE+S ++ I+VD+DT
Sbjct: 47 RNKIAGYITHLMRRIERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTS 106
Query: 180 DMLKMLDFS 206
DMLK F+
Sbjct: 107 DMLKAAGFN 115
>U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical
protein F02E8.5 protein.
Length = 578
Score = 31.1 bits (67), Expect = 0.25
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = +3
Query: 42 MRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNING 218
+R L +V ++ ++ EE+ R +++ QDI + D+ ++ML+ + +N NG
Sbjct: 214 IRELNEQRVDFLNAEVALEEKRRNSRIQDMITSAVQDITDKDTKLEEMLRAMPDTNSNG 272
>AF026202-2|AAB71242.2| 501|Caenorhabditis elegans Hypothetical
protein C10E2.2 protein.
Length = 501
Score = 29.9 bits (64), Expect = 0.58
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 24 GFTTHLMRRLIHSQVRGISIKLQEEERE 107
GFT L RLI +++R + ++EEE E
Sbjct: 471 GFTNELSERLIRAEIRAVEDNVEEEEFE 498
>Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical
protein C03C10.4 protein.
Length = 244
Score = 29.5 bits (63), Expect = 0.77
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +3
Query: 39 LMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQ 149
++ R ++SQ+ +SI L+ E +ER+D+Y + ALEQ
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALEQ 218
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 80 RDSSHLGVYETSHQMGGEPSNFVAPR 3
+ SSH ET H++G PSN+ PR
Sbjct: 719 KKSSHHHSRETKHRIGWSPSNYRNPR 744
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 80 RDSSHLGVYETSHQMGGEPSNFVAPR 3
+ SSH ET H++G PSN+ PR
Sbjct: 941 KKSSHHHSRETKHRIGWSPSNYRNPR 966
>Z93391-2|CAB07681.1| 490|Caenorhabditis elegans Hypothetical
protein W04G5.4 protein.
Length = 490
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 122 IIVTPFTLLFLKLNRDSSHLGVYET 48
II TP T ++ RDS+ G Y T
Sbjct: 282 IIFTPLTNAIFRIRRDSNEAGPYST 306
>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical protein
C18D4.2a protein.
Length = 1817
Score = 26.2 bits (55), Expect = 7.2
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Frame = +3
Query: 39 LMRRLIHSQVRGISIKLQEEERERRDNYV-----PEVSALEQ----DIIEVDS--DTKDM 185
++R L ++ ISIK+ E+++++ N+V E+ L+Q + IEV+ DT D+
Sbjct: 1656 VLRHLDSRLLKTISIKIVEDDQDKPCNWVLPLEINEICELDQWKFAENIEVEHLIDTDDV 1715
Query: 186 LKMLDFSNINGLQLTQPATQG 248
FS N L+LT+ +G
Sbjct: 1716 RHFGHFSEAN-LKLTRLTMEG 1735
>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical protein
C18D4.2a protein.
Length = 1817
Score = 26.2 bits (55), Expect = 7.2
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Frame = +3
Query: 39 LMRRLIHSQVRGISIKLQEEERERRDNYV-----PEVSALEQ----DIIEVDS--DTKDM 185
++R L ++ ISIK+ E+++++ N+V E+ L+Q + IEV+ DT D+
Sbjct: 1656 VLRHLDSRLLKTISIKIVEDDQDKPCNWVLPLEINEICELDQWKFAENIEVEHLIDTDDV 1715
Query: 186 LKMLDFSNINGLQLTQPATQG 248
FS N L+LT+ +G
Sbjct: 1716 RHFGHFSEAN-LKLTRLTMEG 1735
>AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math
domain containingprotein 3 protein.
Length = 306
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 58 TPRCEESLLSFKKRSVKGVTIMSQKYLL*N 147
T +CEE L+ F ++ +K +++KY L N
Sbjct: 235 TRKCEEFLIDFSEKPIKEKLKVAKKYQLEN 264
>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical
protein D2045.2 protein.
Length = 1792
Score = 25.8 bits (54), Expect = 9.5
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 46 DVSYTPRCEESLLSFKKRSVKGVTIMSQK 132
DV RC +++L F RS++ + ++ +K
Sbjct: 155 DVEIIARCFQAILVFSARSIEDIKVLVEK 183
>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
T20G5.1 protein.
Length = 1681
Score = 25.8 bits (54), Expect = 9.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 222 QLTQPATQGGYGGR 263
Q+T P T GGYGG+
Sbjct: 1651 QMTYPGTTGGYGGQ 1664
>U53147-3|AAM29659.1| 550|Caenorhabditis elegans Hypothetical
protein C01B7.1b protein.
Length = 550
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 174 TKDMLKMLDFSNING 218
T D LK+LDF+ ING
Sbjct: 251 TADFLKLLDFTGING 265
>U53147-2|AAA96114.2| 935|Caenorhabditis elegans Hypothetical
protein C01B7.1a protein.
Length = 935
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 174 TKDMLKMLDFSNING 218
T D LK+LDF+ ING
Sbjct: 251 TADFLKLLDFTGING 265
>U41547-5|AAX88831.1| 272|Caenorhabditis elegans C.elegans homeobox
protein 60 protein.
Length = 272
Score = 25.8 bits (54), Expect = 9.5
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +3
Query: 78 SIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQPATQ 245
++++QE+ERER + E A++ + +S T + S + + L P Q
Sbjct: 201 ALRMQEDERERAASMANEAQAIQNSL---NSSTVASSSNMSTSGLINIPLVNPTMQ 253
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,353,125
Number of Sequences: 27780
Number of extensions: 113838
Number of successful extensions: 409
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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