Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E22
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    27   0.18 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    26   0.31 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.7  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   8.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.9  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +2

Query: 317 SRIDETPPQTVRPRSKSLQNSVDISSTRPILRSRSNISADTSRSVPVCNQSHETVNQTEN 496
           + ID + P +V      L+ S D      +     NI  D +R +P     H +V  +EN
Sbjct: 385 NEIDFSFPDSVSDYPLELKGSPD--GFESVTSQYKNIREDDARHIP-----HASVTDSEN 437

Query: 497 GSPQYAEP 520
             P+Y  P
Sbjct: 438 TVPRYLSP 445


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 27/115 (23%), Positives = 44/115 (38%)
 Frame = +2

Query: 227 IDTYNSHRKIKRPKLIGDKKVYRPVRRHTLSRIDETPPQTVRPRSKSLQNSVDISSTRPI 406
           +D     RK    + I   +  R  +R + S +D   P + R  S SL  S         
Sbjct: 1   VDKDECDRKSLSQRKIIRSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTS--------- 51

Query: 407 LRSRSNISADTSRSVPVCNQSHETVNQTENGSPQYAEPKDSDSSSYDLPASMTDL 571
            +   + + + S++   CNQ  E +NQ E  S    E  D    ++ +     DL
Sbjct: 52  -QPHQDHNKEKSKNNHHCNQDTEKLNQLEIESDNSKEVNDKKEENFIVDRLRNDL 105


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 390 RPRDRYYGPGRTYR 431
           RPR  + GP  TYR
Sbjct: 213 RPRSSFQGPPFTYR 226


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 12  HRSSNTHTPDTLRPQRIRVL 71
           H +  TH P TL  + + +L
Sbjct: 107 HTAMVTHLPQTLTSENVEIL 126


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 173 PARNNPPTSQHLSRQTSSIDTYNSH 247
           P   +PP  QH  R +S+  T + H
Sbjct: 273 PGHGSPPVKQH--RSSSASTTCSGH 295


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 164 PQAPARNNPP 193
           PQAP R +PP
Sbjct: 31  PQAPQRGSPP 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,018
Number of Sequences: 438
Number of extensions: 3347
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)