Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_E21
(339 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 86 1e-18
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 85 4e-18
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 1.4
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 26 1.8
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 25 3.2
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 25 4.2
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 24 5.5
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 23 9.6
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc... 23 9.6
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 23 9.6
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 86.2 bits (204), Expect = 1e-18
Identities = 36/68 (52%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Frame = +2
Query: 86 RKWQKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--KRCKRTVAGGAWVFSTTAASSCRS 259
R +K+EV QH++Y C FCG++ +KR+ GIW C K CK+ +AGGAW +T AA+S RS
Sbjct: 24 RDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKVLAGGAWTVTTAAATSARS 83
Query: 260 AVRRLREV 283
+RRLRE+
Sbjct: 84 TIRRLREM 91
Score = 43.6 bits (98), Expect = 8e-06
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +3
Query: 21 MAKRTKKVGITGKYGTRYGAS 83
M KRTKKVG+TGKYG RYGAS
Sbjct: 1 MTKRTKKVGVTGKYGVRYGAS 21
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 84.6 bits (200), Expect = 4e-18
Identities = 36/68 (52%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Frame = +2
Query: 86 RKWQKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--KRCKRTVAGGAWVFSTTAASSCRS 259
R +K+EV QH++Y C FCG+ +KR+ GIW C K C +T+AGGAW +T AA+S RS
Sbjct: 24 RDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKTLAGGAWTVTTAAATSARS 83
Query: 260 AVRRLREV 283
+RRLRE+
Sbjct: 84 TIRRLREM 91
Score = 43.6 bits (98), Expect = 8e-06
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +3
Query: 21 MAKRTKKVGITGKYGTRYGAS 83
M KRTKKVG+TGKYG RYGAS
Sbjct: 1 MTKRTKKVGVTGKYGVRYGAS 21
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.2 bits (55), Expect = 1.4
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 113 QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 202
+H K T C C + +K C +W C+ CK+
Sbjct: 15 RHRKITSCRECHR--LKLKCDRVWPCENCKK 43
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 25.8 bits (54), Expect = 1.8
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +2
Query: 122 KYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 211
KY C CG + C I S RC + A
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMKVYA 139
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 3.2
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = -1
Query: 81 MHHNVCHIYQ-*FRPSWCVWP 22
MHH CH++Q F W +P
Sbjct: 479 MHHYACHVWQKLFETQWYEYP 499
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 24.6 bits (51), Expect = 4.2
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -2
Query: 104 PSFAIYVRCTITCA--IFTSNS 45
PS IY+R T+ CA IFT+ S
Sbjct: 52 PSLWIYIRGTVLCADCIFTAGS 73
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 24.2 bits (50), Expect = 5.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 204 VLLHRLHDQMPTHERFMASLPQNEQV 127
+L +L +Q+PT R AS+P QV
Sbjct: 32 LLKQKLTEQLPTTFRITASIPHATQV 57
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 23.4 bits (48), Expect = 9.6
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +2
Query: 176 IWSCKRCKRT 205
IW+CK C++T
Sbjct: 65 IWTCKNCRKT 74
>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 162 RFMASLPQNEQVYFA 118
RF+ SLPQ E+V FA
Sbjct: 248 RFVQSLPQKEKVPFA 262
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 165 ERFMASLPQNEQVYFA 118
ERF ++PQ++QV FA
Sbjct: 273 ERFAVAVPQSKQVSFA 288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,207,287
Number of Sequences: 5004
Number of extensions: 22435
Number of successful extensions: 60
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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