Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_E21
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 86 6e-18
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 86 6e-18
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 29 1.2
06_03_0749 + 24133302-24134274,24134585-24135272,24135751-241358... 28 1.6
07_03_1133 - 24199643-24200422,24200786-24200968,24201241-242013... 28 2.1
07_01_0385 - 2871628-2872131 28 2.1
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 2.8
02_04_0461 - 23125260-23125868 27 3.8
07_03_1237 + 25073010-25073513 27 5.0
02_02_0260 + 8385014-8385279,8385695-8385809 26 6.6
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 86.2 bits (204), Expect = 6e-18
Identities = 39/67 (58%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Frame = +2
Query: 83 LRKW-QKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRS 259
LRK +KMEV+QH+KY C FCGK A+KR VGIW CK C + AGGA+ +T +A + RS
Sbjct: 47 LRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRS 106
Query: 260 AVRRLRE 280
+RRLRE
Sbjct: 107 TIRRLRE 113
Score = 41.5 bits (93), Expect = 2e-04
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +3
Query: 18 KMAKRTKKVGITGKYGTRYGAS 83
++ KRTKK GI GKYGTRYGAS
Sbjct: 25 ELTKRTKKAGIVGKYGTRYGAS 46
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 86.2 bits (204), Expect = 6e-18
Identities = 39/67 (58%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Frame = +2
Query: 83 LRKW-QKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRS 259
LRK +KMEV+QH+KY C FCGK A+KR VGIW CK C + AGGA+ +T +A + RS
Sbjct: 52 LRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRS 111
Query: 260 AVRRLRE 280
+RRLRE
Sbjct: 112 TIRRLRE 118
Score = 40.3 bits (90), Expect = 4e-04
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 27 KRTKKVGITGKYGTRYGAS 83
KRTKK GI GKYGTRYGAS
Sbjct: 33 KRTKKAGIVGKYGTRYGAS 51
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 140 CGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRLR 277
C +KR+ G W C RC+ + + A +S R RR+R
Sbjct: 58 CLNPPLKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTRRMR 103
>06_03_0749 +
24133302-24134274,24134585-24135272,24135751-24135857,
24137565-24137815
Length = 672
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -2
Query: 203 FSCTVYMTRCLHMNVSWHPCRRMSKCISRVELLPSFAI 90
+ C+V CL V HPC +S S +++ F++
Sbjct: 613 YICSVARANCLPSPVPSHPCAHVSLSTSAIQITLQFSV 650
>07_03_1133 -
24199643-24200422,24200786-24200968,24201241-24201321,
24201439-24201567,24201814-24201885,24201970-24202038,
24202130-24202513,24203813-24203926,24204033-24204074
Length = 617
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 77 CILRKWQKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVAG 214
C R+W + + ++ + CS C + +K S C+ C + V G
Sbjct: 156 CQPREWSEQQASEEGMFFCSLCEVEVLKYS----KHCRVCDKCVDG 197
>07_01_0385 - 2871628-2872131
Length = 167
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 125 YTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 223
+ C FC K K +G K VAGG+W
Sbjct: 47 FPCLFCAKTFRKSQALGGHQNAHRKERVAGGSW 79
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 104 EVTQHAKYTCSFCGKDAM 157
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>02_04_0461 - 23125260-23125868
Length = 202
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 78 ASYVNGKRWK*LNTRNTLAHSAARMP 155
A V+G+RWK TR A +A+R P
Sbjct: 74 AGRVSGRRWKEARTRRASALAASRKP 99
>07_03_1237 + 25073010-25073513
Length = 167
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 158 KRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 253
KR G+ C C RT++GG++ + ++C
Sbjct: 24 KRGAAGV--CNVCDRTISGGSYGYRCGGGAAC 53
>02_02_0260 + 8385014-8385279,8385695-8385809
Length = 126
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +2
Query: 68 TLWCILRKWQKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKR 193
T WC L K K +T+H G M R+ G WS R
Sbjct: 85 TTWCSLFKITKTSITKH--------GSALMDRALAGSWSTSR 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,272,061
Number of Sequences: 37544
Number of extensions: 158523
Number of successful extensions: 446
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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