Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E21
         (339 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical ...    97   3e-21
Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical pr...    29   0.64 
U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical pr...    29   1.1  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   1.5  
U34778-1|AAA97606.1|  418|Caenorhabditis elegans sma-2 protein.        27   2.6  
U10327-1|AAC46583.1|  418|Caenorhabditis elegans MAD homolog 1 p...    27   2.6  
M98552-8|AAA28204.3|  418|Caenorhabditis elegans Small protein 2...    27   2.6  
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro...    27   4.5  
AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical ...    27   4.5  
AF039048-8|AAT68896.1|  367|Caenorhabditis elegans Hypothetical ...    27   4.5  
Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical p...    26   6.0  
Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical pr...    26   6.0  
AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical ...    26   6.0  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    26   7.9  

>AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48B6A.2 protein.
          Length = 91

 Score = 97.1 bits (231), Expect = 3e-21
 Identities = 40/69 (57%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
 Frame = +2

Query: 83  LRKW-QKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRS 259
           LRK  +K+EV QH++YTCSFCGK+AMKR   GIW+C +C + VAGGA+V+ T  A++ RS
Sbjct: 22  LRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKCHKVVAGGAYVYGTVTAATVRS 81

Query: 260 AVRRLREVK 286
            +RRLR++K
Sbjct: 82  TIRRLRDLK 90



 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = +3

Query: 21 MAKRTKKVGITGKYGTRYGAS 83
          MAKRTKKVGI GKYGTRYGAS
Sbjct: 1  MAKRTKKVGIVGKYGTRYGAS 21


>Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical
           protein R09E10.1 protein.
          Length = 294

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 170 HMNVSWHPCRRMSKCISRVELLPSF 96
           ++N   +  RR SKC  RVEL PS+
Sbjct: 261 YVNAKIYASRRNSKCFRRVELFPSY 285


>U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical
           protein C33G8.8 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -2

Query: 176 CLHMNVSWHPCR--RMSKCIS 120
           CLH   S HPCR  RM KCI+
Sbjct: 42  CLHRLPSSHPCRHCRMEKCIA 62


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 113 QHAKYTCSFCGKDAMKRSCVGIWSCKRC 196
           ++ KY C+ C      R   G+WSCK C
Sbjct: 229 ENNKYECAICYTRITTRQ--GVWSCKTC 254


>U34778-1|AAA97606.1|  418|Caenorhabditis elegans sma-2 protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +2

Query: 65  HTLWCILRKWQKMEVTQHAKYT--CSFCGKDAMKRSCVGIWSCKRCKRT 205
           H ++C + +W  ++     K    C FC +   K  C+  +  KR   T
Sbjct: 83  HVIYCRVYRWPDLQSHHELKAIEDCRFCYESGQKDICINPYHYKRVHAT 131


>U10327-1|AAC46583.1|  418|Caenorhabditis elegans MAD homolog 1
           protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +2

Query: 65  HTLWCILRKWQKMEVTQHAKYT--CSFCGKDAMKRSCVGIWSCKRCKRT 205
           H ++C + +W  ++     K    C FC +   K  C+  +  KR   T
Sbjct: 83  HVIYCRVYRWPDLQSHHELKAIEDCRFCYESGQKDICINPYHYKRVHAT 131


>M98552-8|AAA28204.3|  418|Caenorhabditis elegans Small protein 2
           protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +2

Query: 65  HTLWCILRKWQKMEVTQHAKYT--CSFCGKDAMKRSCVGIWSCKRCKRT 205
           H ++C + +W  ++     K    C FC +   K  C+  +  KR   T
Sbjct: 83  HVIYCRVYRWPDLQSHHELKAIEDCRFCYESGQKDICINPYHYKRVHAT 131


>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
           protein F33C8.1a protein.
          Length = 1271

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 158 SWHPCRRMSKCISRVELLPSF 96
           +W+P  + S C+S+ +L P+F
Sbjct: 736 TWYPIDKASPCVSKEDLSPAF 756


>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
           protein.
          Length = 1329

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 158 SWHPCRRMSKCISRVELLPSF 96
           +W+P  + S C+S+ +L P+F
Sbjct: 736 TWYPIDKASPCVSKEDLSPAF 756


>AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical
           protein F16B4.2a protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 158 KRSCVGIWSCKRCKRTVAGGAWVFSTT 238
           K  C+  W+C  C +T+   +W F +T
Sbjct: 333 KEKCILDWTCSTCDKTIE--SWYFRST 357


>AF039048-8|AAT68896.1|  367|Caenorhabditis elegans Hypothetical
           protein F16B4.2b protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 158 KRSCVGIWSCKRCKRTVAGGAWVFSTT 238
           K  C+  W+C  C +T+   +W F +T
Sbjct: 338 KEKCILDWTCSTCDKTIE--SWYFRST 362


>Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 74  WCILRKWQKMEVTQHAKYTCSFCGKDAMKRSCVGIWS 184
           WCI+   QK EV+Q      S    + + RS   +WS
Sbjct: 369 WCIIDSDQKQEVSQSPVCKVSVLHLEYLLRSIPVLWS 405


>Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical
           protein F17C11.1 protein.
          Length = 172

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 140 CGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRS 259
           CGK  + R+C  +    +C        W F+TTAA++  S
Sbjct: 69  CGKSPVNRNCTALVPDSKCV-----FKWAFATTAAATACS 103


>AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 74  WCILRKWQKMEVTQHAKYTCSFCGKDAMKRSCVGIWS 184
           WCI+   QK EV+Q      S    + + RS   +WS
Sbjct: 369 WCIIDSDQKQEVSQSPVCKVSVLHLEYLLRSIPVLWS 405


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 128  TCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 253
            TC  CG++  KR C+ +     C     G A   S  A+S C
Sbjct: 1119 TCGSCGQETRKRKCLSLQYGCAC----TGNATDTSVCASSVC 1156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,849,753
Number of Sequences: 27780
Number of extensions: 135444
Number of successful extensions: 407
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)