Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E21
         (339 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   3.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   4.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   4.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   7.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   7.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   9.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   9.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 70  RVPYLPVIPTFLV 32
           R+P LP+IP + V
Sbjct: 784 RIPILPMIPVYCV 796


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 149 PCRRMSKCISRVEL 108
           PCR  ++CI+R+ L
Sbjct: 478 PCRCHARCIARLAL 491


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/40 (22%), Positives = 18/40 (45%)
 Frame = -1

Query: 180  QMPTHERFMASLPQNEQVYFAC*VTSIFCHLRKMHHNVCH 61
            Q+P    F+  + + +   ++C V + F H    H  + H
Sbjct: 1325 QLPEGSLFIKEVDRTDAGEYSCYVENTFGHDTVTHQLIVH 1364


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 110 TQHAKYTCSFCGK 148
           T    YTC  CGK
Sbjct: 227 TGEKPYTCDICGK 239


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 149 PCRRMSKCISRVEL 108
           PCR  ++CI+R+ L
Sbjct: 478 PCRCHARCIARLAL 491


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 83  LRKWQKMEVTQHA 121
           +RK +KME+ +HA
Sbjct: 852 IRKQKKMELARHA 864


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 125 YTCSFCGK 148
           YTC  CGK
Sbjct: 372 YTCDVCGK 379


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 76  P*RVPYLPVIP 44
           P  VPY PVIP
Sbjct: 648 PLNVPYGPVIP 658


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 116 HAKYTCSFCG 145
           H +YTC  CG
Sbjct: 480 HDEYTCMDCG 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,415
Number of Sequences: 438
Number of extensions: 1453
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)