Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E20
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...   152   4e-38
SPAP27G11.07c |||serine/threonine protein kinase |Schizosaccharo...    28   0.90 
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.6  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   3.6  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    26   4.8  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   6.3  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    25   6.3  

>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score =  152 bits (368), Expect = 4e-38
 Identities = 82/159 (51%), Positives = 105/159 (66%)
 Frame = +3

Query: 111 QEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLIRVGKTE 290
           + ++PEV+++V+VNVR I EMGAYV LLEY+NIEGM               K IRVG+ E
Sbjct: 10  ENRFPEVDELVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELSRRRIRSVQKHIRVGRNE 69

Query: 291 PVVVIRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAELLHYESSEQLEE 470
            VVV+RVDKEKGYIDLSKRRVS ED+ KC ER+ K+KAV+SI+RH+AE    + +  LE 
Sbjct: 70  VVVVLRVDKEKGYIDLSKRRVSPEDVVKCEERFNKSKAVHSIMRHIAE----KHNVPLET 125

Query: 471 LYKRTAWHFEEKYKKKASAYDFFKQAAVDPSVLNECGLD 587
           +Y    W     Y+K   AYD FK A  +P  + E GL+
Sbjct: 126 MYTTIGWPL---YRKYGHAYDAFKLAISNPDHVFE-GLE 160


>SPAP27G11.07c |||serine/threonine protein kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 238

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +3

Query: 327 YIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAELLHY--ESSEQLEELYKRTAWHFE 500
           +ID     VS  + DK  + Y   +A++S L     L H+  +S  Q  +  K T   FE
Sbjct: 166 FIDFGLGSVSESEEDKAVDIYVLERALSSTLPESESLFHHVLDSYAQSWKQSKATLRRFE 225

Query: 501 E 503
           E
Sbjct: 226 E 226


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 193 SKWTYAPISAIDLTFTITTSSTSGYFSWIKPTRKWHLVFIFF 68
           S W   PISA      +    TSG+FS++     ++L  I F
Sbjct: 176 SNWMLLPISANPWYIQVAFCVTSGFFSYLFINALYYLFAIIF 217


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 483 TAWHFEEKYKKKASAYDFFKQAAVDPSVLNEC 578
           T ++FE  +     A D F Q  +DP  L EC
Sbjct: 107 TNYYFEVSHDALYGALDRFAQFFIDPLFLEEC 138


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 559 GSTAACLKKSYAEAFFLYFSSKCHAVLL 476
           G + A +  S+ E  FL+ SS+ H+V L
Sbjct: 102 GVSLAAISSSFGEISFLHLSSRYHSVSL 129


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 557 IYSSLFKEVICRSFLFIFLFKVPCCPLVQLFQLL 456
           I+SS+F  V C S L+I    +P  PL  L  +L
Sbjct: 321 IFSSIFFWVWCHSLLYIVPKTLPIKPLSSLLFVL 354


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -1

Query: 200 VLQQVDVRAHLSYRPHVYHHYIFYFWILFLDKTDTKVASCVYILSNFIRI 51
           ++Q + V    SY P  Y  Y  Y  +LF+    T + S V    N I I
Sbjct: 155 MVQALAVIGSPSYSPTKYEQYGIYAALLFVISAMTAIPSRVIAKVNIINI 204



 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 112 WIKPTRKWHLVFIFFQIL 59
           W KP   W LV+++F IL
Sbjct: 449 WSKPAALWSLVWMWFMIL 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,926
Number of Sequences: 5004
Number of extensions: 46661
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)