Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E20
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0677 + 10343089-10343604,10344316-10344462,10344539-103446...   146   1e-35
07_03_1773 - 29422660-29422806,29423103-29423201,29423811-294239...   144   4e-35
08_02_1260 - 25680618-25680677,25680763-25680893,25681085-256811...    28   4.9  

>03_02_0677 +
           10343089-10343604,10344316-10344462,10344539-10344643,
           10345411-10345509,10345662-10345814
          Length = 339

 Score =  146 bits (354), Expect = 1e-35
 Identities = 73/153 (47%), Positives = 98/153 (64%)
 Frame = +3

Query: 111 QEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLIRVGKTE 290
           + ++PEV+  VM+ V+ IA+MGAYV LLEYNNIEGM              + LI+VG+ E
Sbjct: 10  EPRFPEVDAAVMIQVKHIADMGAYVSLLEYNNIEGMILFSELSRRRIRSISSLIKVGRQE 69

Query: 291 PVVVIRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAELLHYESSEQLEE 470
           P +V+RVD++KGYIDLSKRRVS E+   C +RY K+K V+SI+RHVAE L  +    LE 
Sbjct: 70  PAIVLRVDRDKGYIDLSKRRVSEEEAHACEDRYNKSKLVHSIMRHVAETLGID----LEP 125

Query: 471 LYKRTAWHFEEKYKKKASAYDFFKQAAVDPSVL 569
           LY+R  W     Y+K   A++ FK    DP  +
Sbjct: 126 LYQRIGWPL---YRKYGHAFEAFKLIVADPDAI 155


>07_03_1773 -
           29422660-29422806,29423103-29423201,29423811-29423915,
           29423990-29424136,29424436-29424954
          Length = 338

 Score =  144 bits (350), Expect = 4e-35
 Identities = 75/147 (51%), Positives = 93/147 (63%)
 Frame = +3

Query: 120 YPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLIRVGKTEPVV 299
           +PEVE  VM+ V+ +AE+GAYV LLEYNNIEGM                LI+VG+ EP V
Sbjct: 13  FPEVETAVMIQVKHLAELGAYVSLLEYNNIEGMILYSELSRRRIRSIPSLIKVGRQEPAV 72

Query: 300 VIRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAELLHYESSEQLEELYK 479
           V+RVD +KGYIDLSKRRVS  D   C +RY+K+K V+SI+RH+AE LH +    LE LY 
Sbjct: 73  VLRVDHDKGYIDLSKRRVSHHDRRTCEDRYSKSKFVHSIMRHLAETLHLD----LEPLYH 128

Query: 480 RTAWHFEEKYKKKASAYDFFKQAAVDP 560
           R AW     Y+    A+D FK    DP
Sbjct: 129 RIAWPL---YRTYGHAFDAFKLIVADP 152


>08_02_1260 -
           25680618-25680677,25680763-25680893,25681085-25681163,
           25681250-25681280,25681358-25681410,25681441-25681511,
           25681610-25681678,25681776-25681889,25683101-25683293
          Length = 266

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 7/20 (35%), Positives = 18/20 (90%)
 Frame = +3

Query: 486 AWHFEEKYKKKASAYDFFKQ 545
           AW+++E+Y+K+A  +D++++
Sbjct: 19  AWYWDERYRKEAGPFDWYQK 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,610,042
Number of Sequences: 37544
Number of extensions: 264215
Number of successful extensions: 769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)