Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E20
         (596 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J02645-1|AAA52373.1|  315|Homo sapiens EIF2 protein.                  208   9e-54
BC002513-1|AAH02513.1|  315|Homo sapiens EIF2S1 protein protein.      208   9e-54
U93570-2|AAC51273.1| 1275|Homo sapiens putative p150 protein.          29   9.5  

>J02645-1|AAA52373.1|  315|Homo sapiens EIF2 protein.
          Length = 315

 Score =  208 bits (509), Expect = 9e-54
 Identities = 103/164 (62%), Positives = 121/164 (73%), Gaps = 1/164 (0%)
 Frame = +3

Query: 105 FIQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLIRVGK 284
           F Q K+PEVEDVVMVNVRSIAEMGAYV LLEYNNIEGM              NKLIR+G+
Sbjct: 8   FYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGR 67

Query: 285 TEPVVVIRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAELLHYESSEQL 464
            E VVVIRVDKEKGYIDLSKRRVS E+  KC +++ K+K V SILRHVAE+L Y   EQL
Sbjct: 68  NECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQL 127

Query: 465 EELYKRTAWHFEEKYKKKA-SAYDFFKQAAVDPSVLNECGLDEN 593
           E L++RTAW F++KYK+    AYD FK A  DPS+L+   L+E+
Sbjct: 128 ESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNED 171


>BC002513-1|AAH02513.1|  315|Homo sapiens EIF2S1 protein protein.
          Length = 315

 Score =  208 bits (509), Expect = 9e-54
 Identities = 103/164 (62%), Positives = 121/164 (73%), Gaps = 1/164 (0%)
 Frame = +3

Query: 105 FIQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLIRVGK 284
           F Q K+PEVEDVVMVNVRSIAEMGAYV LLEYNNIEGM              NKLIR+G+
Sbjct: 8   FYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGR 67

Query: 285 TEPVVVIRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAELLHYESSEQL 464
            E VVVIRVDKEKGYIDLSKRRVS E+  KC +++ K+K V SILRHVAE+L Y   EQL
Sbjct: 68  NECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQL 127

Query: 465 EELYKRTAWHFEEKYKKKA-SAYDFFKQAAVDPSVLNECGLDEN 593
           E L++RTAW F++KYK+    AYD FK A  DPS+L+   L+E+
Sbjct: 128 ESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNED 171


>U93570-2|AAC51273.1| 1275|Homo sapiens putative p150 protein.
          Length = 1275

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 18/79 (22%), Positives = 40/79 (50%)
 Frame = +3

Query: 264 KLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAELLH 443
           K +  GK   +   +  +E+  ID    ++  ++++K  + ++KA     I +  AEL  
Sbjct: 292 KAVCRGKFTALNAYKRKQERSKIDTLTSQL--KELEKQEQTHSKASRRQEITKIRAELKE 349

Query: 444 YESSEQLEELYKRTAWHFE 500
            E+ + L+++ +  +W FE
Sbjct: 350 IETQKTLQKINESRSWFFE 368


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,936,266
Number of Sequences: 237096
Number of extensions: 1617453
Number of successful extensions: 7095
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7087
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)