Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E20
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-10|AAK27873.2|  342|Caenorhabditis elegans Hypothetical...   196   7e-51
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ...    29   2.5  
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ...    29   2.5  
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr...    28   4.4  
AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine re...    28   5.8  
AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z34799-4|CAD44130.2|  691|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AC087079-10|AAK27873.2|  342|Caenorhabditis elegans Hypothetical
           protein Y37E3.10 protein.
          Length = 342

 Score =  196 bits (479), Expect = 7e-51
 Identities = 89/160 (55%), Positives = 121/160 (75%)
 Frame = +3

Query: 105 FIQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLIRVGK 284
           F + ++P+VE+ V+ NV+ IA+MGAYV L EYN+ EGM              NKLIRVG+
Sbjct: 5   FYENQFPDVEETVVANVKMIADMGAYVRLSEYNDKEGMILLSELSRRRIRSVNKLIRVGR 64

Query: 285 TEPVVVIRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAELLHYESSEQL 464
           +E VVVIRVDK+KGYIDLSKRRV  +D+ +C ER+A AK VNSILRHVAE + Y + E+L
Sbjct: 65  SESVVVIRVDKDKGYIDLSKRRVYQKDLKQCDERFANAKMVNSILRHVAEQVGYTTDEEL 124

Query: 465 EELYKRTAWHFEEKYKKKASAYDFFKQAAVDPSVLNECGL 584
           E+LY++TAWHF+ K K+KA++YD FK+A  +P++L+EC +
Sbjct: 125 EDLYQKTAWHFDRKEKRKAASYDAFKKAITEPTILDECDI 164


>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           a protein.
          Length = 1650

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/49 (28%), Positives = 30/49 (61%)
 Frame = +3

Query: 390 AKAKAVNSILRHVAELLHYESSEQLEELYKRTAWHFEEKYKKKASAYDF 536
           A+ +A +++ R + ++L   + EQLE++Y+  A H +EK  ++  +  F
Sbjct: 366 AELEAAHTVAR-IVKVLRECNEEQLEQIYRHVAEHKDEKIAEQLRSIYF 413


>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           c protein.
          Length = 1651

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/49 (28%), Positives = 30/49 (61%)
 Frame = +3

Query: 390 AKAKAVNSILRHVAELLHYESSEQLEELYKRTAWHFEEKYKKKASAYDF 536
           A+ +A +++ R + ++L   + EQLE++Y+  A H +EK  ++  +  F
Sbjct: 366 AELEAAHTVAR-IVKVLRECNEEQLEQIYRHVAEHKDEKIAEQLRSIYF 413


>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1651

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/49 (28%), Positives = 30/49 (61%)
 Frame = +3

Query: 390 AKAKAVNSILRHVAELLHYESSEQLEELYKRTAWHFEEKYKKKASAYDF 536
           A+ +A +++ R + ++L   + EQLE++Y+  A H +EK  ++  +  F
Sbjct: 366 AELEAPHTVAR-IVKVLRECNEEQLEQIYRHVAEHKDEKIAEQLRSIYF 413


>AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine
           receptor, class z protein20 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 200 VLQQVDVRAHLSYRPHVYHHYIFYFWILFLDKTDTKVASCVYILSNFIRI 51
           +L  +  R H  Y   +    IF+F  ++++ TDT +    YIL  F+ I
Sbjct: 152 ILIHIHKRVHYLYFAFITKTVIFFFVAMYMEWTDTNI---WYILPAFVSI 198


>AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.7 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
 Frame = +3

Query: 273 RVGKTEPVVVIRVDKEKGYI--DLSKRRVS-AEDIDKCTERYAKAKAVNSILRHVAELLH 443
           RVGK + VV+ +V+K  G+I  +  +R +  A +++   E  +   A N  L    + LH
Sbjct: 120 RVGKAQIVVMEKVEKATGHIIQEFHERELDLARNVEILQEENSNLTAKNEKLEETVDDLH 179

Query: 444 YESSEQLEELYKR-TAWHFEEKYKKKASAYDFF 539
            E    LE   K  T  + + + K   S+ + F
Sbjct: 180 -EKVANLETSNKELTEINVDNERKISNSSDEIF 211


>Z34799-4|CAD44130.2|  691|Caenorhabditis elegans Hypothetical
           protein F34D10.7 protein.
          Length = 691

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
 Frame = +3

Query: 309 VDKEKGYIDLSKRRVSAEDIDKCTERY-AKAKAVNSILRHVAELLHYESSEQLEELYKRT 485
           +DK K  +   K  + A D   CT  + A       I+R++A   HY S     +  KRT
Sbjct: 468 LDKVKELMKTKKLAI-ARDRFGCTPLHSAVVHEHTEIVRYIAG--HYNSVLNAPDYNKRT 524

Query: 486 AWHFEEKYKKKASAYDFFKQAAVDPSVLNECG 581
           A H+    +          +A  DP  ++  G
Sbjct: 525 AMHYAAAARDGGHYLKILGKAGADPMAVDNEG 556


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,131,479
Number of Sequences: 27780
Number of extensions: 255107
Number of successful extensions: 775
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)