Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E19
         (330 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0725 + 35759792-35760358                                         27   4.7  
03_05_0171 + 21486473-21486775,21486835-21486912,21487223-214874...    26   6.2  

>03_06_0725 + 35759792-35760358
          Length = 188

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 111 GCRGARPPRAGVTAAAASPRGKLFTKGTRRR 19
           G    +PP A     AA+PR  +FT GT +R
Sbjct: 6   GDAAEQPPAAPEAKRAAAPRTLVFTYGTLKR 36


>03_05_0171 +
           21486473-21486775,21486835-21486912,21487223-21487407,
           21487507-21487897
          Length = 318

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -1

Query: 117 RLGCR--GARPPRAGVTAAAAS 58
           RL CR  GARPPR    AAAA+
Sbjct: 46  RLVCRSSGARPPRERAVAAAAA 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.306    0.126    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,453,254
Number of Sequences: 37544
Number of extensions: 53947
Number of successful extensions: 173
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)