Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E19
         (330 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      27   4.2  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    27   4.2  
Z70308-12|CAA94354.1|  211|Caenorhabditis elegans Hypothetical p...    26   5.5  
Z70307-17|CAA94341.1|  211|Caenorhabditis elegans Hypothetical p...    26   5.5  
AF100659-1|AAC68963.1|  232|Caenorhabditis elegans Hypothetical ...    25   9.7  

>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 120 HRLGCRGARPPRAGVTAAAASPRGKL 43
           H +G    +PP + V AAAA+P G +
Sbjct: 642 HAVGLASHQPPASPVAAAAAAPGGPM 667


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
           pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 120 HRLGCRGARPPRAGVTAAAASPRGKL 43
           H +G    +PP + V AAAA+P G +
Sbjct: 642 HAVGLASHQPPASPVAAAAAAPGGPM 667


>Z70308-12|CAA94354.1|  211|Caenorhabditis elegans Hypothetical
           protein F49E11.11 protein.
          Length = 211

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 6   RGSKACGACPS*TTCRAVT 62
           +    C ACP+ TTC A T
Sbjct: 189 KSGTTCSACPTGTTCEAAT 207


>Z70307-17|CAA94341.1|  211|Caenorhabditis elegans Hypothetical
           protein F49E11.11 protein.
          Length = 211

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 6   RGSKACGACPS*TTCRAVT 62
           +    C ACP+ TTC A T
Sbjct: 189 KSGTTCSACPTGTTCEAAT 207


>AF100659-1|AAC68963.1|  232|Caenorhabditis elegans Hypothetical
           protein F58E2.5 protein.
          Length = 232

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 15  KACGACPS*TTCR 53
           KAC ACP  T+CR
Sbjct: 213 KACSACPPPTSCR 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.306    0.126    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,093,685
Number of Sequences: 27780
Number of extensions: 29894
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)