Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E17
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    87   2e-18
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    27   1.7  
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    27   1.7  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    26   3.0  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   4.0  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    25   5.3  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.3  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   5.3  
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    25   5.3  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   5.3  
SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces po...    25   5.3  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   9.3  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   9.3  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 87.0 bits (206), Expect = 2e-18
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
 Frame = +2

Query: 146 KISLKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNLGNHVVIARD-KTKVAINAD 322
           K+S K+ ID T    D I DV  FEKYL +R+KV+GKT NLG+ VV++R+  +K+A+ A 
Sbjct: 7   KVSNKYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAH 66

Query: 323 IPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDSYELRYF 442
           I FS                  DWLRVV++    YELRY+
Sbjct: 67  IDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYY 106


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -1

Query: 279 T*LPRLFVLPSTLTRSFKYFSKLPTSRMLSSAGCVQSMVNLRLIF-LLEPLPRICQPFTP 103
           T +P+L  L   +T  +  F++    R+    G ++++  L ++F +L  L RI  PFTP
Sbjct: 714 TVVPQLLGLIEEMTNWYIRFNR---RRLKGEDGEIETINALNVLFEVLFTLVRIMGPFTP 770

Query: 102 FL 97
           F+
Sbjct: 771 FI 772


>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 181 VCAVNGKFKANLPLGTFAANLPTFYSFLTSLLV 83
           VC + GK   NLP G +  N P  +  L  L V
Sbjct: 192 VCILKGKTHENLPWGEWCGNTPFAFHPLVVLFV 224


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +3

Query: 342 ISNT*PSVTSRKTIFGT-GSEWWLLHMT----HMSFATSTSMLIATMKTTRIKLFINKI 503
           I N     TS K +FG  G  WW+L +T    H +F   T      ++ + + +F +++
Sbjct: 180 ILNNGIKATSTKVLFGLLGLWWWMLFVTASFYHTTFEKCTGFFSGILEWSIVYVFSSRM 238


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = -1

Query: 90  FW-CXWPFFATGFFVLPSW 37
           FW   W FF   F VLP+W
Sbjct: 685 FWESLWKFFTHFFIVLPTW 703


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -3

Query: 520 FFWCKTILFINSLILVVFIVAISIDVEVAKL 428
           FF+  T+L++ +LIL  FIV ++  + V KL
Sbjct: 100 FFYSSTLLYLTALIL--FIVNVAPSMLVVKL 128


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 381  IFGTGSEWWLLHMTHMSFATSTSMLIATMKTTRIKLF 491
            +F   S WW L   +MS+   +  L  T+ ++  K F
Sbjct: 1499 VFSHFSSWWNLFSNNMSYPLRSGNLFPTLDSSPNKKF 1535


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 239  VKVEGKTNNLGNHVVIARDKTKVAINADIP 328
            +K+ G  NNL +++ +   +T++  + DIP
Sbjct: 1210 IKLVGMANNLNDNLELEEFRTRITNSMDIP 1239


>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 115 TFYSFLTSLLVXLAFLCDGLLCTAILATEHV*R 17
           T +SF+ S  V + F   G L T +L+T H+ R
Sbjct: 159 TGFSFVWSACVAILFPFVGFLVTYVLSTTHLGR 191


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 5   EAVTALHVFCCQDGSTKKPV 64
           +AV+ LH +C Q G  +KP+
Sbjct: 159 KAVSNLHAYCSQSGLYRKPL 178


>SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 164

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -3

Query: 205 IQDAILSRVCAVNGKFKANLPLGTFAANL---PTFYSFLTSLLVXLAFLCDGLLCTAIL 38
           I+   LSR+C V+ KF+A      FA+N      ++ F     +   F+   L+ T I+
Sbjct: 69  IELPFLSRICPVSDKFQAF--TNAFASNYYRGLVYFIFSVVTFLSCIFMATSLIATGIV 125


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 203  DVGNFEKYLKERVKVEGKTNNLGNH 277
            + GN +KY +  +KV GK ++   H
Sbjct: 955  EAGNLKKYDQPNLKVSGKNDSFVTH 979


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 140 KRKISLKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNL 268
           K  +  K ++D  H  +   L   N +  +KE+ KV+G+ + L
Sbjct: 147 KEDLHKKLSVDNAHLIKQLDLLSSNMKTLMKEKTKVQGQRDLL 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,015,185
Number of Sequences: 5004
Number of extensions: 39022
Number of successful extensions: 114
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)