Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_E17
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0963 - 12769715-12769859,12770639-12770889 97 8e-21
07_03_1662 + 28447419-28447666,28448429-28448573 97 1e-20
08_02_1012 + 23550314-23551504 30 1.3
01_03_0093 - 12422558-12422607,12422679-12422935,12423565-124239... 29 3.1
10_06_0052 + 10106778-10107017,10107420-10107969,10108134-101083... 28 4.1
11_06_0037 - 19478885-19480472,19483125-19483267 28 5.4
09_04_0430 + 17502387-17503505 28 5.4
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 28 5.4
10_01_0214 - 2298914-2299342 27 7.1
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 27 9.4
08_01_0332 + 2971361-2971439,2971596-2971783,2971985-2972062,297... 27 9.4
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528... 27 9.4
01_07_0095 + 41053562-41053603,41054609-41054846,41055064-410553... 27 9.4
01_02_0106 - 11175200-11175385,11175463-11175496,11175987-111762... 27 9.4
>03_02_0963 - 12769715-12769859,12770639-12770889
Length = 131
Score = 97.1 bits (231), Expect = 8e-21
Identities = 48/109 (44%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Frame = +2
Query: 125 RGKGSKRKISLKFTIDCTHPAEDSILDVGNFEKYLKERVKVE-GKTNNLGNHVVIARDKT 301
+G K+K S+ F IDC P +D I+++ + EK+L+ER+KV GK NLG V ++RDKT
Sbjct: 12 KGGAGKKKGSVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVSRDKT 71
Query: 302 KVAINADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDS--YELRYF 442
KV + +D PFS DWLRV+AS D YELRYF
Sbjct: 72 KVTVTSDGPFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYF 120
>07_03_1662 + 28447419-28447666,28448429-28448573
Length = 130
Score = 96.7 bits (230), Expect = 1e-20
Identities = 48/108 (44%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Frame = +2
Query: 128 GKGSKRKISLKFTIDCTHPAEDSILDVGNFEKYLKERVKVE-GKTNNLGNHVVIARDKTK 304
G G K+K S+ F IDC+ P ED I+++ + EK+L+ER+KV GK NLG+ V + RDKTK
Sbjct: 12 GAGGKKKGSVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKTK 71
Query: 305 VAINADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDS--YELRYF 442
V + +D FS DWLRV+A+ D YELRYF
Sbjct: 72 VTVTSDGAFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYF 119
>08_02_1012 + 23550314-23551504
Length = 396
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 114 PFTPFLPVFWCXWPFFATGFFVLPSWQQNTCSAVTAS 4
P P +++C W FF GF P++ + T S+ ++S
Sbjct: 265 PIVPGTDMYYCSWGFFPMGFPGGPAFARPTSSSSSSS 301
>01_03_0093 -
12422558-12422607,12422679-12422935,12423565-12423932,
12423939-12424800,12425247-12425464
Length = 584
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +1
Query: 25 RVLLPRW--QYKEARRKERPVTPEDW*ERSKRLANSR 129
R + +W + +E R+K +PV E+W +RS+ A +R
Sbjct: 156 RTKVEQWTKEEEEMRKKGQPVPMEEWTQRSRNWARAR 192
>10_06_0052 +
10106778-10107017,10107420-10107969,10108134-10108358,
10108552-10108865,10108880-10109214,10109298-10109549,
10109630-10109740,10109828-10109888,10110038-10110130,
10110208-10110264
Length = 745
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 4 RGGNSATRVLLPRW-QYKEARRKERPVTPEDW*ERSKRLANSR 129
R G++ + +W + +E R+K +PV E+W +RSK +R
Sbjct: 162 RLGSAGYAPKVEQWTKEEEMRKKGQPVLMEEWTQRSKNWVRAR 204
>11_06_0037 - 19478885-19480472,19483125-19483267
Length = 576
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -1
Query: 243 LTRSFKYFSKLPTSRMLSSAGCVQSMVNLRLIFLLEPLPRICQPFTPFLPVFW 85
L RS+ L S+++ S GC +S V L FLL+ +P +P FW
Sbjct: 365 LPRSWHSSCTLDGSKLVVSGGCTESGVLLSDTFLLDLTKE--KPAWKEIPTFW 415
>09_04_0430 + 17502387-17503505
Length = 372
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -1
Query: 114 PFTPFLPVFWCXWPFFATGFFVLPSWQQ 31
P P +++C W FF GF P +++
Sbjct: 271 PIVPGTDMYYCTWGFFPVGFPGCPGFEK 298
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 13 NSATRVLLPRWQYKEARRKERPVTPEDW*ERSK 111
N +R L W Y ++R +P TPE ++S+
Sbjct: 579 NKHSRTLKVNWHYSDSRFPPKPTTPEQGRQQSE 611
>10_01_0214 - 2298914-2299342
Length = 142
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 4 RGGNSATRVLLPRWQYKEARRKERPVTPE 90
R + AT +P W Y E R++ +PV P+
Sbjct: 8 RNLSPATLDAVPYWHYGEGRQRTKPVHPQ 36
>12_01_1080 +
11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 134 GSKRKISLKFTIDCTHPAEDSILDVGNFE 220
G++R +S +D HPA D G+FE
Sbjct: 67 GARRSLSAAMDVDVGHPATAVATDEGDFE 95
>08_01_0332 +
2971361-2971439,2971596-2971783,2971985-2972062,
2972354-2972425,2972513-2972631,2972858-2972942,
2973096-2973185,2973268-2973369,2973448-2973624,
2973874-2973954,2974511-2974582,2974662-2974756,
2974831-2974919,2975016-2975078,2975161-2975204,
2975554-2975685
Length = 521
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = -3
Query: 529 FFFFFWCKTILF--INSLILVVFIV 461
FFFFF+C ILF +N L+L + ++
Sbjct: 308 FFFFFFCANILFHHLNYLLLRMKVI 332
>03_02_0927 -
12452262-12452428,12452538-12452607,12452689-12452830,
12452937-12453117,12454068-12454203
Length = 231
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +3
Query: 381 IFGTGSEWWLLHMTHMSFATSTS---MLIATMKTTRIKL 488
IFG WWL + +SF T S +++ ++ RIK+
Sbjct: 62 IFGATMAWWLFEKSGLSFLTVCSDVLLILIVVQFIRIKV 100
>01_07_0095 +
41053562-41053603,41054609-41054846,41055064-41055312,
41055419-41055469,41056044-41056256,41056305-41056367,
41056422-41056474,41056953-41057067,41057150-41057404,
41057531-41058618
Length = 788
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 128 REFANLLLLSYQSSGVTGLSLRRASLYCH 42
+ + NLLLL+YQS GV L + LY +
Sbjct: 17 QHYRNLLLLAYQSFGVVYGDLSTSPLYVY 45
>01_02_0106 -
11175200-11175385,11175463-11175496,11175987-11176247,
11176501-11176831,11176899-11177589,11177611-11178156,
11178441-11178680
Length = 762
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 52 KEARRKERPVTPEDW*ERSKRLANSR 129
+E R+K +PV E+W +RS+ +R
Sbjct: 180 EEMRKKRQPVPMEEWIQRSRNWVRAR 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,511,465
Number of Sequences: 37544
Number of extensions: 268479
Number of successful extensions: 794
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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