Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E17
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal prote...    86   1e-17
U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal prote...    32   0.22 
Z30317-3|CAA82969.1|  930|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AF099920-5|AAK29843.2|  361|Caenorhabditis elegans Serpentine re...    28   3.6  
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass...    28   4.8  
U00036-9|AAK29852.1|  377|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform a protein.
          Length = 130

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 40/102 (39%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
 Frame = +2

Query: 140 KRKISLKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNL-GNHVVIARDKTKVAIN 316
           K+K+ LKF ++C +P ED IL + + E +L E++KV GKT +L  N+V +   K+KV++ 
Sbjct: 16  KKKVHLKFNVECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLAANNVKVEVAKSKVSVV 75

Query: 317 ADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDSYELRYF 442
           +++PFS                  DWLRVVA   ++YE+RYF
Sbjct: 76  SEVPFSKRYLKYLTKKYLKRNSLRDWLRVVAVNKNTYEVRYF 117


>U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform b protein.
          Length = 53

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 140 KRKISLKFTIDCTHPAEDSILDV 208
           K+K+ LKF ++C +P ED IL +
Sbjct: 16  KKKVHLKFNVECKNPVEDGILRI 38


>Z30317-3|CAA82969.1|  930|Caenorhabditis elegans Hypothetical
           protein T16G12.6 protein.
          Length = 930

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 121 LPTFYSFLTSLLVXLAFLCDGLLCTAILATEHV*RCYRLV 2
           LP+F+ F+ SLL    F+ + ++    LA   V +C  LV
Sbjct: 704 LPSFFPFIVSLLNSSLFVTESVIAACALAKSTVLQCGSLV 743


>AF099920-5|AAK29843.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein94 protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = +3

Query: 84  TRRLVRKE*KVGKFAAKVPRGRLALNLPLT-----AHTLLRIASW 203
           TRR  RK   + KF A +  G LAL+LPLT      + +++I  W
Sbjct: 150 TRRAFRKV-TLSKFGAYIFMGALALSLPLTFIFYFRYDIVKIGDW 193


>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 158 protein.
          Length = 1003

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -3

Query: 157 KANLPLGTFAANLPTFYSFLTSLLVXLAFLCDGLLCTAIL 38
           +A++P GT AANL T + + +     LAF+  G +  A+L
Sbjct: 357 QASIPAGTIAANLTTSFVYFS-----LAFIFGGAIDNAVL 391


>U00036-9|AAK29852.1|  377|Caenorhabditis elegans Hypothetical
           protein R151.1 protein.
          Length = 377

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = -3

Query: 508 KTILFINSLILVVFIVAISIDVEVAKLI*VMCRSHHSEPVPK 383
           KT + + S ILV+F++ ++    +  +I ++C     + + K
Sbjct: 266 KTTMLMESSILVIFLIVVACMSPICTMIVLLCLRRRKKEIKK 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,391,891
Number of Sequences: 27780
Number of extensions: 232221
Number of successful extensions: 645
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)