Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E17
         (531 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.64 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             25   0.64 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.9  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   5.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   5.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   5.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 107 LLSYQSSGVTGLSLRRASLYCHLGNRTR 24
           ++S Q     G++ RRASL+C L   TR
Sbjct: 218 IVSPQEERPKGINGRRASLFCGLQKYTR 245


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 107 LLSYQSSGVTGLSLRRASLYCHLGNRTR 24
           ++S Q     G++ RRASL+C L   TR
Sbjct: 213 IVSPQEERPKGINGRRASLFCGLQKYTR 240


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 142 LGTFAANLPTFYSFLTSLLVXL 77
           L +  AN+PT+ SF+  +LV L
Sbjct: 41  LESIIANIPTWLSFIRIVLVIL 62


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = -1

Query: 105 PF-LPVFWCXWPFFATGFFVL 46
           PF LP+F   W F   G++ L
Sbjct: 56  PFSLPIFGTRWIFSCIGYYKL 76


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = +3

Query: 381 IFGTGSEWWLLHMTH 425
           ++   +EW ++HM+H
Sbjct: 201 MYNNNTEWEIVHMSH 215


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 497 IYKQLNPRCLHCRYQ 453
           I K+   RC +CRYQ
Sbjct: 154 IDKRQRNRCQYCRYQ 168


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 497 IYKQLNPRCLHCRYQ 453
           I K+   RC +CRYQ
Sbjct: 154 IDKRQRNRCQYCRYQ 168


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 157 KANLPLGTFAANLPTFYSFLTSLLVXLAFLCDGLLCTAI 41
           K + P  TF+        FL  +L+ L+   + L+C AI
Sbjct: 12  KEDQPENTFSLLSVLLVGFLFLILIFLSVAGNILVCVAI 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,581
Number of Sequences: 438
Number of extensions: 2699
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)