Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E16
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    26   2.8  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   6.5  

>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -2

Query: 111 ISITXNGNLRLASKIN---EWPYLFVLMSQNNTC 19
           +S T +G+  L S ++   E PY+F  +S +NTC
Sbjct: 347 VSHTLSGHKNLVSGLSASPENPYMFASVSHDNTC 380


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +3

Query: 126 IAISSFIIYNRKLR 167
           ++IS+FI+YNRK R
Sbjct: 14  VSISNFILYNRKYR 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,793,802
Number of Sequences: 5004
Number of extensions: 31178
Number of successful extensions: 64
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)