Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E16
         (508 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC091514-1|AAH91514.1|  671|Homo sapiens sorbin and SH3 domain c...    31   3.1  
BC067260-1|AAH67260.2|  671|Homo sapiens sorbin and SH3 domain c...    31   3.1  
BC004314-1|AAH04314.1|  268|Homo sapiens SORBS3 protein protein.       31   3.1  
AF064807-1|AAD32304.1|  329|Homo sapiens vinexin beta protein.         31   3.1  
AF037261-1|AAC09244.1|  671|Homo sapiens SH3-containing adaptor ...    31   3.1  
BC010146-1|AAH10146.1|  329|Homo sapiens sorbin and SH3 domain c...    30   5.3  

>BC091514-1|AAH91514.1|  671|Homo sapiens sorbin and SH3 domain
           containing 3 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
 Frame = +3

Query: 162 LRMVLRVRTESDLSVMREVSNQ*LIGD-TGKPHQGLFPXSTVXPLLCPRLRTSLLGEAHR 338
           L + L  R    + ++R+V+     G  TG   QG+FP S V     PRLR    G    
Sbjct: 469 LEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPRLRLCDDGPQLP 528

Query: 339 CVPRGVIF*VLGANPAVDRTLRGQGDAPDLYG 434
             PR         +P+    LR   D  DL G
Sbjct: 529 TSPRLTAAARSARHPSSPSALRSPADPTDLGG 560


>BC067260-1|AAH67260.2|  671|Homo sapiens sorbin and SH3 domain
           containing 3 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
 Frame = +3

Query: 162 LRMVLRVRTESDLSVMREVSNQ*LIGD-TGKPHQGLFPXSTVXPLLCPRLRTSLLGEAHR 338
           L + L  R    + ++R+V+     G  TG   QG+FP S V     PRLR    G    
Sbjct: 469 LEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPRLRLCDDGPQLP 528

Query: 339 CVPRGVIF*VLGANPAVDRTLRGQGDAPDLYG 434
             PR         +P+    LR   D  DL G
Sbjct: 529 TSPRLTAAARSARHPSSPSALRSPADPTDLGG 560


>BC004314-1|AAH04314.1|  268|Homo sapiens SORBS3 protein protein.
          Length = 268

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
 Frame = +3

Query: 162 LRMVLRVRTESDLSVMREVSNQ*LIGD-TGKPHQGLFPXSTVXPLLCPRLRTSLLGEAHR 338
           L + L  R    + ++R+V+     G  TG   QG+FP S V     PRLR    G    
Sbjct: 66  LEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPRLRLCDDGPQLP 125

Query: 339 CVPRGVIF*VLGANPAVDRTLRGQGDAPDLYG 434
             PR         +P+    LR   D  DL G
Sbjct: 126 TSPRLTAAARSARHPSSPSALRSPADPTDLGG 157


>AF064807-1|AAD32304.1|  329|Homo sapiens vinexin beta protein.
          Length = 329

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
 Frame = +3

Query: 162 LRMVLRVRTESDLSVMREVSNQ*LIGD-TGKPHQGLFPXSTVXPLLCPRLRTSLLGEAHR 338
           L + L  R    + ++R+V+     G  TG   QG+FP S V     PRLR    G    
Sbjct: 127 LEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPRLRLCDDGPQLP 186

Query: 339 CVPRGVIF*VLGANPAVDRTLRGQGDAPDLYG 434
             PR         +P+    LR   D  DL G
Sbjct: 187 TSPRLTAAARSARHPSSPSALRSPADPTDLGG 218


>AF037261-1|AAC09244.1|  671|Homo sapiens SH3-containing adaptor
           molecule-1 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
 Frame = +3

Query: 162 LRMVLRVRTESDLSVMREVSNQ*LIGD-TGKPHQGLFPXSTVXPLLCPRLRTSLLGEAHR 338
           L + L  R    + ++R+V+     G  TG   QG+FP S V     PRLR    G    
Sbjct: 469 LEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPRLRLCDDGPQLP 528

Query: 339 CVPRGVIF*VLGANPAVDRTLRGQGDAPDLYG 434
             PR         +P+    LR   D  DL G
Sbjct: 529 TSPRLTAAARSARHPSSPSALRSPADPTDLGG 560


>BC010146-1|AAH10146.1|  329|Homo sapiens sorbin and SH3 domain
           containing 3 protein.
          Length = 329

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
 Frame = +3

Query: 162 LRMVLRVRTESDLSVMREVSNQ*LIGD-TGKPHQGLFPXSTVXPLLCPRLRTSLLGEAHR 338
           L + L  R    + ++R+V+     G  TG   QG+FP S V     PRLR    G    
Sbjct: 127 LEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPRLRLCDDGPQLP 186

Query: 339 CVPRGVIF*VLGANPAVDRTLRGQGDAPDLYG 434
             PR         +P+    LR   D  DL G
Sbjct: 187 TSPRLTAAARSARHPSSPSALRSPADPIDLGG 218


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,674,646
Number of Sequences: 237096
Number of extensions: 1093463
Number of successful extensions: 1803
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1803
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)