Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E13
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    27   2.7  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   8.4  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   8.4  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   8.4  

>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 278 FSPRVYTNDTKVSCSNITPES 340
           FSP+  ++ T+ + SN+TPES
Sbjct: 195 FSPKALSSPTQGASSNVTPES 215


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 360 QKAIDNVIPRFDKNLEDFFSICDQMELHLR 449
           +K I +++P +  +  DF S+    ++H+R
Sbjct: 29  KKRILSILPYYKNSYSDFISVLQMYKVHIR 58


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = -2

Query: 170 RYWHLHTYIWCCSYGIHWHVHIH 102
           R W +  ++ CC Y +++   +H
Sbjct: 687 RQWPIQMFVACCGYVVYYFSSLH 709


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = +3

Query: 255  SKVKTLMGSLRESIPMTLKSAAQILHQNHNIDSNPQKAIDNVIPRFDKNLEDFF 416
            S  + + G  +  +P  L    QI   + ++DS   K + +    F   L D+F
Sbjct: 914  SLARAMQGEFKPYLPSLLVMMLQIFDSDVSVDSVSTKKVLHAFIVFGDTLADYF 967


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,250
Number of Sequences: 5004
Number of extensions: 46278
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)