Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E13
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29645-1|CAA82753.1|  522|Caenorhabditis elegans kinesin light c...    28   4.4  
Z29644-1|CAA82752.1|  540|Caenorhabditis elegans kinesin light c...    28   4.4  
U55369-14|AAN84862.1|  540|Caenorhabditis elegans Kinesin light ...    28   4.4  
U55369-13|AAN84863.1|  501|Caenorhabditis elegans Kinesin light ...    28   4.4  
U55369-12|AAK52182.1|  522|Caenorhabditis elegans Kinesin light ...    28   4.4  
U55369-11|AAT68902.1|  531|Caenorhabditis elegans Kinesin light ...    28   4.4  
Z83109-2|CAB05517.1|  372|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z29645-1|CAA82753.1|  522|Caenorhabditis elegans kinesin light
           chain (isoform 2) protein.
          Length = 522

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 87  MNHNQMNMHVPMNPVGAAPNVGMQMP 164
           MN +Q N   P N + A+ NVG ++P
Sbjct: 199 MNASQFNQPTPANQMAASANVGYEIP 224


>Z29644-1|CAA82752.1|  540|Caenorhabditis elegans kinesin light
           chain (isoform 1) protein.
          Length = 540

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 87  MNHNQMNMHVPMNPVGAAPNVGMQMP 164
           MN +Q N   P N + A+ NVG ++P
Sbjct: 178 MNASQFNQPTPANQMAASANVGYEIP 203


>U55369-14|AAN84862.1|  540|Caenorhabditis elegans Kinesin light
           chain protein 2,isoform b protein.
          Length = 540

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 87  MNHNQMNMHVPMNPVGAAPNVGMQMP 164
           MN +Q N   P N + A+ NVG ++P
Sbjct: 178 MNASQFNQPTPANQMAASANVGYEIP 203


>U55369-13|AAN84863.1|  501|Caenorhabditis elegans Kinesin light
           chain protein 2,isoform c protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 87  MNHNQMNMHVPMNPVGAAPNVGMQMP 164
           MN +Q N   P N + A+ NVG ++P
Sbjct: 178 MNASQFNQPTPANQMAASANVGYEIP 203


>U55369-12|AAK52182.1|  522|Caenorhabditis elegans Kinesin light
           chain protein 2,isoform a protein.
          Length = 522

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 87  MNHNQMNMHVPMNPVGAAPNVGMQMP 164
           MN +Q N   P N + A+ NVG ++P
Sbjct: 199 MNASQFNQPTPANQMAASANVGYEIP 224


>U55369-11|AAT68902.1|  531|Caenorhabditis elegans Kinesin light
           chain protein 2,isoform d protein.
          Length = 531

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 87  MNHNQMNMHVPMNPVGAAPNVGMQMP 164
           MN +Q N   P N + A+ NVG ++P
Sbjct: 178 MNASQFNQPTPANQMAASANVGYEIP 203


>Z83109-2|CAB05517.1|  372|Caenorhabditis elegans Hypothetical
           protein F44G3.2 protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 342 NIDSNPQKAIDNVIPRFDKNLEDFFSICDQMELHLR 449
           N+ S  + ++   +P+     EDF  ICD+++L LR
Sbjct: 290 NLGSTVRASVHIALPKLSAR-EDFKQICDKLDLQLR 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,927,135
Number of Sequences: 27780
Number of extensions: 257617
Number of successful extensions: 724
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)