Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E13
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   5.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   6.9  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.2  

>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 544 CAVGPESSLDGNTDSG 497
           C+ G  S  DG TD G
Sbjct: 18  CSSGSSSDSDGQTDEG 33


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -2

Query: 149 YIWCCSYGIHWHVHIHLIMIHCY*FRFLK--KIKYKT 45
           Y  CC + I W +    I +  + F  +K   +KY T
Sbjct: 485 YYPCCWWKICWTITTPAICVGVFTFNIIKFVPVKYLT 521


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -2

Query: 149 YIWCCSYGIHWHVHIHLIMIHCY*FRFLK--KIKYKT 45
           Y  CC + I W +    I +  + F  +K   +KY T
Sbjct: 538 YYPCCWWKICWTITTPAICVGVFTFNIIKFVPVKYLT 574


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 248 QYIQSKNVNGFSPRVYTNDTKVSCSNIT 331
           ++ ++KN N  S  V  N     C NIT
Sbjct: 88  EFSENKNCNAGSLTVKKNFANKYCGNIT 115


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 264 LLWIYCPFCL 235
           L+WI C FC+
Sbjct: 182 LVWILCYFCI 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,932
Number of Sequences: 438
Number of extensions: 3334
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)