Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_E11
(215 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 25 1.4
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 25 1.8
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 24 2.4
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 24 3.1
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 3.1
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 24 3.1
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 23 4.1
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 23 4.1
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 23 4.1
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 23 5.5
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 23 5.5
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 23 5.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 23 7.2
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 22 9.6
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 22 9.6
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 22 9.6
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 22 9.6
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.0 bits (52), Expect = 1.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 118 VIYPSSCLCSASSTMELVFINKAIFPVFH 32
+++P+S SA + +L + I PVFH
Sbjct: 739 LLFPASLKRSAKNIFDLAYQLNGILPVFH 767
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 24.6 bits (51), Expect = 1.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 22 WKWNGKLEI-SLYL*IRVPSWNLRYTNSSKDK*RVWERYCKKK 147
+K NGK SLY IR+ S+N + K + W +Y K
Sbjct: 27 YKPNGKTSCCSLYT-IRLDSYNFKIAKEQKKAIKKWVKYVNGK 68
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 24.2 bits (50), Expect = 2.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 113 NDVYGKDTVKKSTVRFWFQR 172
+D+YGK T KST++F ++
Sbjct: 141 DDLYGKITEVKSTIKFQLKK 160
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 179 NENVETKNVPCFFLQYLSHTRHLSFEL 99
+++ ET+ + CF L+H HLSF++
Sbjct: 134 SKSAETR-IQCFKWFVLAHNAHLSFDV 159
>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 151 RAFFYSIFPIHVIYPS 104
R FF+ I P H++Y S
Sbjct: 128 RLFFFRIIPSHILYNS 143
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 23.8 bits (49), Expect = 3.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 19 KWKWNGKLEIS 51
+WKWNG+ IS
Sbjct: 251 EWKWNGRASIS 261
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 17 ESGSGMENWKYRFIYEYEFHR-GTCATQTARRI 112
E+GSG +F+YE +HR G RR+
Sbjct: 516 ETGSGKTTQLAQFLYEDGYHRNGMIGCTQPRRV 548
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 206 VRSVGQNFRNENVETKNVPCF 144
V +G+NFRNE ++ + P F
Sbjct: 274 VFELGKNFRNEGIDATHNPEF 294
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 20 SGSGMENWKYRFIYEYEFHRGTCATQ 97
+G + +W +Y +EFHRGT TQ
Sbjct: 541 AGQTLPSWNGE-LY-FEFHRGTYTTQ 564
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 161 KNVPCFFLQYLSHTRHLSF 105
K +P F+ Y+ +TR LSF
Sbjct: 243 KGLPEEFITYMCYTRQLSF 261
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/34 (23%), Positives = 18/34 (52%)
Frame = -1
Query: 215 VHGVRSVGQNFRNENVETKNVPCFFLQYLSHTRH 114
+H + + + + N+E + + +QYLS+ H
Sbjct: 970 IHDHKMLEEKLQESNIEAQRIVRSKMQYLSNMSH 1003
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 23.0 bits (47), Expect = 5.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 195 RSKFPERKR*NQKRTVLFFTVSFPYTSFILR 103
R +FP K N KR +F + +FILR
Sbjct: 312 RIRFPFHKSINHKRFPMFIYAIGCFINFILR 342
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 134 TVKKSTVRFWFQRFRSGN 187
++KK T +W FRS N
Sbjct: 3509 SLKKDTKEYWLNLFRSKN 3526
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 121 VWERYCKKKHGTFLVSTF 174
V+E+YC H T +S F
Sbjct: 497 VFEKYCLLDHSTSTISLF 514
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 14 LESGSGMENWKYRFIYEYEF 73
L+ GS + WK RFI F
Sbjct: 160 LQRGSQIRVWKIRFIISISF 179
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 22.2 bits (45), Expect = 9.6
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = -3
Query: 114 FILRAVCVAQVPRWNS 67
F+L +C+ + RW+S
Sbjct: 1828 FMLPVICIPYIDRWHS 1843
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 145 KHGTFLVSTFS 177
+HG FLVSTF+
Sbjct: 195 RHGRFLVSTFN 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,007,329
Number of Sequences: 5004
Number of extensions: 18192
Number of successful extensions: 54
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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