Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E11
         (215 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0609 + 22710442-22713502,22713596-22713948                       26   4.8  
02_04_0108 + 19808539-19808761,19809054-19809697,19809785-198098...    26   4.8  

>06_03_0609 + 22710442-22713502,22713596-22713948
          Length = 1137

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 192 SKFPERKR*NQKRTVLFFTVSFPYTSFILRAVCVAQV 82
           SK  ++KR + +  VL  T+  P  +     +C+A++
Sbjct: 754 SKLVDKKRNHSRSLVLVLTIVIPIVAITFTLLCLAKI 790


>02_04_0108 +
           19808539-19808761,19809054-19809697,19809785-19809844,
           19809879-19809938,19810079-19810372
          Length = 426

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = -1

Query: 161 KNVPCFFLQYLSHTRHLSFELF 96
           +NV  + ++Y+SH RH++ +++
Sbjct: 51  RNVATYSVRYVSHLRHITVQIY 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,016,419
Number of Sequences: 37544
Number of extensions: 101694
Number of successful extensions: 253
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)