Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_E10
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 253 1e-68
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 253 1e-68
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 29 0.51
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 28 1.2
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 27 2.1
SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24 ... 27 2.1
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 27 2.1
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 27 2.7
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 27 2.7
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 25 8.3
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 25 8.3
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 253 bits (620), Expect = 1e-68
Identities = 120/194 (61%), Positives = 139/194 (71%)
Frame = +1
Query: 10 NGGTIEDKVKWAREHLEKPIPIDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTH 189
NGG++ DKV+WAREH EK + I S F Q+EMID I +RW TK+LPRKTH
Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTH 243
Query: 190 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHTKDGKVIKNNAST 369
+GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G K NAST
Sbjct: 244 RGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK-------NAST 296
Query: 370 EYDFSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRVITLRKSLRVHTKRAALEKIDL 549
++D +EK ITPMGGF YG V NDFVM+ G GP KRV+TLRKSL HT R ALE + L
Sbjct: 297 DFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSL 356
Query: 550 KFIDTASKFGHGRF 591
K+IDTASKFGHGRF
Sbjct: 357 KWIDTASKFGHGRF 370
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 253 bits (620), Expect = 1e-68
Identities = 120/194 (61%), Positives = 139/194 (71%)
Frame = +1
Query: 10 NGGTIEDKVKWAREHLEKPIPIDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTH 189
NGG++ DKV+WAREH EK + I S F Q+EMID I +RW TK+LPRKTH
Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTH 243
Query: 190 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHTKDGKVIKNNAST 369
+GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G K NAST
Sbjct: 244 RGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK-------NAST 296
Query: 370 EYDFSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRVITLRKSLRVHTKRAALEKIDL 549
++D +EK ITPMGGF YG V NDFVM+ G GP KRV+TLRKSL HT R ALE + L
Sbjct: 297 DFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSL 356
Query: 550 KFIDTASKFGHGRF 591
K+IDTASKFGHGRF
Sbjct: 357 KWIDTASKFGHGRF 370
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 29.1 bits (62), Expect = 0.51
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -3
Query: 429 FTVVGETTHGGNGLFREIIFSGSIVLDNFS 340
FT VGE T GN L+RE+ +G I L+ S
Sbjct: 230 FTGVGERTREGNDLYREMQETGVIKLEGES 259
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 231 FKSFVHCGSCWSEGLSSPNRNEQEDISYWARYPHQGWKSY 350
F+ + GS W+E + N ++S W++ GWK +
Sbjct: 880 FRYSLDFGSTWTEWQTYDGNNTYCNLSGWSQSSRYGWKGH 919
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 27.1 bits (57), Expect = 2.1
Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 11/152 (7%)
Frame = +1
Query: 1 ARGNGGTIEDKVKWAREHLEKPIPIDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 180
A NGG++ W+ + P+ + +V A+DE+ W P
Sbjct: 263 APNNGGSLHSDRLWSSFPVSYPLTLANVLAKDEV--------------GSPTW--SPTPS 306
Query: 181 KTHKGLRK--VACIGAWHPSRVSFTVAR---AGQKGYHHRTEMNK------KIYRIGQGI 327
K+ LR+ V I ++ ++ VAR + +KGY T+ + +++
Sbjct: 307 KSSTNLRQDGVPPILRFNSLSINTNVARNYLSSEKGYSAHTQNSSAQSPHPRVFSANSAF 366
Query: 328 HTKDGKVIKNNASTEYDFSEKSITPMGGFPHY 423
T + + S +Y FS +I+P F Y
Sbjct: 367 STTSPPPLTPSTSRDYPFSASTISPSTPFSAY 398
>SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 175
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 335 RMEKLSRTMLPLNMISLKSPLPPWVVS 415
R LS + LN +SL+SP+P W VS
Sbjct: 3 RRGALSTILKGLNGLSLRSPIPIWHVS 29
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 2.1
Identities = 22/73 (30%), Positives = 30/73 (41%)
Frame = -3
Query: 501 LSQSDDTFLRSHATALDHHKVIVYFTVVGETTHGGNGLFREIIFSGSIVLDNFSILGVDT 322
LSQS+ RSH T D YF + N L + + + LD + +T
Sbjct: 178 LSQSNGFEARSHGTGFDE-----YFDKFSQRKTSSNTLSQLPVLDNQVYLDTVKEICTET 232
Query: 321 LPNTIYLLVHFCS 283
+T LVHF S
Sbjct: 233 EQHT-QTLVHFQS 244
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 295 NKKIYRIGQGIHTKDGKVIKNNASTEYDFSEKSITPMGGFP 417
N ++ I + T + K+ + TEYDFS T G FP
Sbjct: 118 NVRVLNISNPMTTHNAKLSGLSLDTEYDFSLVLDTTAGTFP 158
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 149 HLVGTQRNCRVKLTRVSVKLLVLEHGILQEFRSLWLVLVRRAIITEQK 292
H + + NC + + + +V+ +GIL +R L VL R ++ E +
Sbjct: 91 HGIPSPINCHPQRSDPHSEFIVVHNGILTNYRELRTVLESRGMVFESE 138
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -2
Query: 310 DISSCSFLFGDDSPSDQHEPQ*TKLLKDAMLQYKQLYGDPCEFYAAISLC 161
++SS +F DD EP+ K KD + K+ + CE S C
Sbjct: 8 EVSSSPDIFTDDDDMITIEPELNKNPKDCNSKRKRSVTECCEIRLITSKC 57
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 143 VLHLVGTQRNCRVKLTRVSVKLLVLEHGILQEFR-SLW 253
+LH VG ++ V++K L+H + + F+ SLW
Sbjct: 604 ILHCVGNEKLYNPFYGLVALKCCTLQHNLKKSFQFSLW 641
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,952
Number of Sequences: 5004
Number of extensions: 58358
Number of successful extensions: 166
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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