Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_E10
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 264 3e-71
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 264 3e-71
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 2.8
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235... 28 4.9
01_06_0895 - 32804433-32804744,32804948-32805163,32805301-328056... 28 4.9
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 28 6.5
06_03_1340 + 29455210-29455290,29455493-29455571,29455767-294558... 27 8.5
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 264 bits (648), Expect = 3e-71
Identities = 124/194 (63%), Positives = 147/194 (75%)
Frame = +1
Query: 10 NGGTIEDKVKWAREHLEKPIPIDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTH 189
NGGTI DKV + + EK IP+D+VF +DEMID I +RW +LPRKTH
Sbjct: 187 NGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH 246
Query: 190 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHTKDGKVIKNNAST 369
+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+ + A T
Sbjct: 247 RGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-SHAACT 300
Query: 370 EYDFSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRVITLRKSLRVHTKRAALEKIDL 549
E+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKRV+TLR+SL T R ALE+I L
Sbjct: 301 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
Query: 550 KFIDTASKFGHGRF 591
KFIDT+SKFGHGRF
Sbjct: 361 KFIDTSSKFGHGRF 374
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 264 bits (648), Expect = 3e-71
Identities = 124/194 (63%), Positives = 147/194 (75%)
Frame = +1
Query: 10 NGGTIEDKVKWAREHLEKPIPIDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTH 189
NGGTI DKV + + EK IP+D+VF +DEMID I +RW +LPRKTH
Sbjct: 187 NGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH 246
Query: 190 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHTKDGKVIKNNAST 369
+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+ + A T
Sbjct: 247 RGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-SHAACT 300
Query: 370 EYDFSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRVITLRKSLRVHTKRAALEKIDL 549
E+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKRV+TLR+SL T R ALE+I L
Sbjct: 301 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
Query: 550 KFIDTASKFGHGRF 591
KFIDT+SKFGHGRF
Sbjct: 361 KFIDTSSKFGHGRF 374
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 376 DFSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 471
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>08_02_0499 -
17820615-17822516,17823224-17823373,17823491-17823568,
17823948-17824061,17824145-17824297,17826928-17827071,
17827162-17827516,17828574-17828741,17829522-17829751,
17829916-17830049,17830686-17830749
Length = 1163
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 276 SSPNRNEQEDISYWARYPHQGWKSYQEQCFH 368
+ PN+ +Q+ + Y Q W+ YQ+Q ++
Sbjct: 902 AQPNQGDQQSLQTMQGYASQMWQYYQQQMYY 932
>01_06_0895 -
32804433-32804744,32804948-32805163,32805301-32805642,
32805778-32806020,32806130-32806582,32806898-32807113,
32808360-32808432,32808750-32808790,32809027-32809118,
32809222-32809333,32810003-32810078,32810154-32810301,
32811195-32811336,32812120-32812196,32813568-32813619
Length = 864
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 343 KVIKNNASTE-YDFSEKSITPMGGFPHYGEVNNDFVMI 453
+++++ TE +F +K +TP G P Y E DF+ +
Sbjct: 133 ELVRSRKCTEALEFGQKKLTPFGKVPKYVEKLEDFMAL 170
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -3
Query: 567 SRINELQIDLLQCCSLSVHTKRLSQSDDTFLRSHATALDHHKVIVYFTVVGETTHGGN 394
S IN ++ DL+ SL VHT L+ +D + +D+ + + GE H N
Sbjct: 1497 SSINAVEPDLIHSASLDVHTDSLTPADAVINDGQSCGVDNDGQMSR-VINGEENHISN 1553
>06_03_1340 +
29455210-29455290,29455493-29455571,29455767-29455814,
29455908-29455931,29456433-29456615,29456730-29456805,
29456937-29457072
Length = 208
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 447 HKVIVYFTVVGETTHGGNGLFREIIFSGSIVLDNFSI 337
H++I F + G T GNG + I+ G +NF I
Sbjct: 97 HRIIPGFMIQGGDTVSGNGTGCDSIYGGMFPDENFKI 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,263,512
Number of Sequences: 37544
Number of extensions: 391417
Number of successful extensions: 963
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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