Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E10
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.74 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   5.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   5.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   5.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   5.2  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   6.9  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 492 SDDTFLRSHATALDHHKVIVYFTVVGETTHGGNGLF 385
           SDD+F R  +   D+       TV GE+    NG++
Sbjct: 222 SDDSFHRLTSNTFDYDPRYTKLTVAGESFTVKNGIY 257


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 360 IVLDNFSI-LGVDTLPNTIYLLVHFCSVMIALLT 262
           ++L  FS  LG+D +P  + LLV     ++ + T
Sbjct: 214 VMLSWFSFWLGLDAIPGRVALLVTSMLTLVTMFT 247


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 492 SDDTFLRSHATALDHHKVIVYFTVVGETTHGGNGL 388
           SDD+F R  +   D+       T+ GE+    +G+
Sbjct: 219 SDDSFHRLTSNTFDYDPKFTKMTIDGESYTAQDGI 253


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 414 ETTHGGNGLFR 382
           ETTH G  LFR
Sbjct: 455 ETTHSGTSLFR 465


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 492 SDDTFLRSHATALDHHKVIVYFTVVGETTHGGNGL 388
           SDD+F R  +   D+       T+ GE+    +G+
Sbjct: 219 SDDSFHRLTSNTFDYDPKFTKMTIDGESYTAQDGI 253


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 492 SDDTFLRSHATALDHHKVIVYFTVVGETTHGGNGL 388
           SDD+F R  +   D+       T+ GE+    +G+
Sbjct: 219 SDDSFHRLTSNTFDYDPKFTKMTIDGESYTAQDGI 253


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 4  RGNGGTIEDK 33
          RGNGGT E+K
Sbjct: 12 RGNGGTPEEK 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,215
Number of Sequences: 438
Number of extensions: 3984
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)