Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E09
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   155   5e-39
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   154   8e-39
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    29   0.40 
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    29   0.69 
SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy...    27   2.1  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   3.7  
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    26   3.7  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   6.4  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   8.5  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   8.5  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  155 bits (376), Expect = 5e-39
 Identities = 89/177 (50%), Positives = 114/177 (64%), Gaps = 3/177 (1%)
 Frame = +3

Query: 81  MGISRDHWHKRGLR-RQTCAHS*KRKYD--RSPGCNTKLGPQRIHLVRSRGGNTKYRALR 251
           MGI+RD  HKR     +   +  KRK++  R P  NT++GP+RIH VR RGGN K+RALR
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPS-NTRIGPKRIHEVRVRGGNKKFRALR 59

Query: 252 LDTGNFAFGDLNCSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYL 431
           LD+GNF++G    S +KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY 
Sbjct: 60  LDSGNFSWGSEGVS-KKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYG 118

Query: 432 LPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACV 602
           + +G  KG K T          +S+   +K+ +R   SKV+  LE QF  GRL A V
Sbjct: 119 ILMG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVV 169


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  154 bits (374), Expect = 8e-39
 Identities = 89/177 (50%), Positives = 114/177 (64%), Gaps = 3/177 (1%)
 Frame = +3

Query: 81  MGISRDHWHKRGLR-RQTCAHS*KRKYD--RSPGCNTKLGPQRIHLVRSRGGNTKYRALR 251
           MGI+RD  HKR     +   +  KRK++  R P  NT++GP+RIH VR RGGN K+RALR
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPS-NTRIGPKRIHEVRVRGGNKKFRALR 59

Query: 252 LDTGNFAFGDLNCSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYL 431
           LD+GNF++G    S +KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY 
Sbjct: 60  LDSGNFSWGSEGVS-KKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYG 118

Query: 432 LPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACV 602
           + +G  KG K T          +S+   +K+ +R   SKV+  LE QF  GRL A V
Sbjct: 119 ILMG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVV 169


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 435 PLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGL 563
           PL R+K  +LT  E  +  +  S  T+KK+  + + SK   G+
Sbjct: 569 PLSRRKARQLTALELGVSPEALSSATSKKHNKKNKRSKQRSGV 611


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 381 VVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSK 548
           V  DA   ++  E   ++   +KK +KL EA+     K++ +K  KK+   +R S+
Sbjct: 434 VTKDAEESQEDVEMDIVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSE 489


>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 228

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 330 HYKQHQ*YESCGLNNSDPQMRSFQYQDAGHDI*CYHH 220
           HY + + +  C L   +P+    Q  DAG  + C+H+
Sbjct: 59  HYTKEEAFFDCHLMVIEPERYIDQLADAGASLFCFHY 95


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 383 DNSILYQGFGTHQFIVRGIINNI 315
           +NS+ +Q F +H FI R +IN I
Sbjct: 541 ENSLYHQSFSSHWFISRLLINPI 563


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 419 FIPLPERCGIHHDNSILYQ 363
           F+P PE C I+H+  I  Q
Sbjct: 477 FLPAPEECNIYHNEHIQVQ 495


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 279 DLNCSTRKTRIIDVVY-NASNNELVRTKTLVKNAI 380
           D+NCST++   + V+Y   S N++++ K  V+  +
Sbjct: 318 DMNCSTQQYVKLQVIYKEKSENDILKFKKYVQQTL 352


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 476  LSLSELGTFLPSEW 435
            LSL+E GTFL  EW
Sbjct: 1554 LSLNECGTFLQKEW 1567


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 426 YLLPLGRKKGAKLTE 470
           Y+LPLGRK   K TE
Sbjct: 492 YILPLGRKTARKCTE 506


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -2

Query: 271 AKFPVSRRRA-RYLVLPPRDLTKW---MRWGPSLVLQPGDLSYFLFYEWAHVCRRSPLLC 104
           AK P+ +RR  + L+L  RDLT W    R+   L    GD    +F    H   RS L  
Sbjct: 420 AKKPILKRRTPQELLLSGRDLTPWPQIRRFDSLLARNRGD----IFSNRNHATIRSALFS 475

Query: 103 Q 101
           Q
Sbjct: 476 Q 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,365
Number of Sequences: 5004
Number of extensions: 60944
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)