Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_E09
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 166 1e-41
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 151 4e-37
07_03_0409 + 17817046-17817126,17818320-17818523,17818744-178188... 31 0.53
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 31 0.93
09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757 30 1.6
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 29 2.1
05_01_0573 - 5083030-5083151,5084639-5084738,5084790-5084829,508... 29 2.1
01_06_0060 + 26068792-26069363,26069525-26070209 29 2.1
09_04_0396 + 17269928-17270344,17270455-17270517,17270635-17270718 29 2.8
04_02_0033 - 8997041-8997754 29 3.7
02_01_0463 - 3336485-3336921,3337415-3337454,3338794-3339045 29 3.7
10_06_0175 - 11490280-11491000,11491869-11491947,11493613-114938... 28 5.0
02_02_0694 + 13013966-13014361 28 5.0
05_07_0165 + 28107093-28108457 28 6.5
02_04_0199 - 20861793-20862023,20862588-20862798,20863260-208641... 28 6.5
01_02_0122 + 11348686-11348948,11350492-11350587,11351513-113515... 28 6.5
09_03_0103 - 12383585-12384700 27 8.7
03_02_0052 + 5285061-5285106,5285711-5285754,5286317-5286539,528... 27 8.7
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 166 bits (403), Expect = 1e-41
Identities = 97/186 (52%), Positives = 121/186 (65%), Gaps = 12/186 (6%)
Frame = +3
Query: 81 MGISRDHWHKR-GLRRQTCAHS*KRKYD--RSPGCNTKLGPQR-IHLVRSRGGNTKYRAL 248
MGISRD HKR + A KRKY+ R P NTKL + + VR RGGN K+RAL
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPA-NTKLSSNKTVRRVRVRGGNLKWRAL 59
Query: 249 RLDTGNFAFGDLNCSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHY 428
RLDTGN+++G TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY
Sbjct: 60 RLDTGNYSWGS-EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHY 118
Query: 429 LLPLGRKK--------GAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTG 584
+ +GRKK A+ E E A K+S +K RQ+ ++ +EEQF +G
Sbjct: 119 GVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSG 178
Query: 585 RLLACV 602
RLLAC+
Sbjct: 179 RLLACI 184
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 151 bits (366), Expect = 4e-37
Identities = 97/203 (47%), Positives = 121/203 (59%), Gaps = 29/203 (14%)
Frame = +3
Query: 81 MGISRDHWHKR-GLRRQTCAHS*KRKYD--RSPGCNTKLGPQR-IHLVRSRGGNTKYRAL 248
MGISRD HKR + A KRKY+ R P NTKL + + VR RGGN K+RAL
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPA-NTKLSSNKTVRRVRVRGGNVKWRAL 59
Query: 249 RLDTGNFAFGDLNCSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHY 428
RLDTGN+++G TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY
Sbjct: 60 RLDTGNYSWGS-EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHY 118
Query: 429 LLPLGRKKGA-------------------------KLTEAEEAIINKKRSQKTAKKYLSR 533
+ +GRKK A K +AE K+S +K R
Sbjct: 119 GVDIGRKKKAPAAKKDAEHALGKIRCLFIGLYVMLKGQDAEATTEEAKKSNHVVRKLEKR 178
Query: 534 QRLSKVEGGLEEQFHTGRLLACV 602
Q+ ++ +EEQF +GRLLAC+
Sbjct: 179 QQGRTLDAHIEEQFGSGRLLACI 201
>07_03_0409 +
17817046-17817126,17818320-17818523,17818744-17818856,
17819446-17819491,17819741-17819787,17820250-17820325,
17820865-17820937,17821059-17821204,17821382-17821467,
17821734-17821873,17821944-17822083,17822171-17822221,
17823644-17823702,17823793-17823949,17824793-17824845,
17824936-17825034,17825876-17825990,17826075-17826197,
17826417-17826584
Length = 658
Score = 31.5 bits (68), Expect = 0.53
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 292 EQFRSPNAKFPVSRRRARYLVLPPRDLTK 206
E F+ PN K P + R Y ++P +D+T+
Sbjct: 348 EDFKLPNLKIPYNNRLGFYFIVPQKDITE 376
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 201 IHLVRSRGGNTKYRALRL--DTGNFAFGDLNCSTRKTRIIDVVYNASNNELVRTKTLVKN 374
+H + + GG T R +R T N LNC +++ ++V++ + NELV T +N
Sbjct: 376 LHGLLASGGGTADRCIRFWNTTTNM---HLNCVDTGSQVCNLVWSKNVNELVSTHGYSQN 432
Query: 375 AIVV 386
I+V
Sbjct: 433 QIIV 436
>09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757
Length = 817
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Frame = +3
Query: 45 TMDPGLRIRTRQMGISRDHWHKRGLRRQTCAHS*KRKYDRSPGCNTKLGPQRIHL----- 209
T P LR+R R +G+ D W G+R A + GC L Q HL
Sbjct: 140 THTPKLRVRLRFLGVESDPWWDAGVRLPGFAGVTPAFFPERSGCRVTL-YQNSHLSGGFD 198
Query: 210 --VRSRGGNTKYRALRL 254
VR GG YR RL
Sbjct: 199 PGVRLAGGGA-YRPARL 214
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 280 SPNAKFPVSRRRARYLVLPPRDLTKWMRWGP 188
SP+ +RRR R+ + PPR +RW P
Sbjct: 17 SPSPAVAATRRRLRFPLAPPRPRPPPLRWSP 47
>05_01_0573 -
5083030-5083151,5084639-5084738,5084790-5084829,
5085122-5085567
Length = 235
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 548 GRGWSGGAIPHWTAVS 595
G GW GG+ HW++VS
Sbjct: 65 GNGWQGGSTDHWSSVS 80
>01_06_0060 + 26068792-26069363,26069525-26070209
Length = 418
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 229 LPPRDLTKWMRWGPSLVLQPGDLSYFLFYEWAHVCRRSPLL 107
L PR + W R+G LV P S F F +A + +PLL
Sbjct: 165 LGPRGTSSWRRFGLKLVADPPGSSQFRFL-FAELVNNTPLL 204
>09_04_0396 + 17269928-17270344,17270455-17270517,17270635-17270718
Length = 187
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 21 SSTGGGV*TMDPGLRIRTRQMGISRDHWHKRGLRR 125
S++GG V DPG+R+R R+ RG RR
Sbjct: 57 STSGGRVAARDPGVRVRAREGAEEEKKGRGRGRRR 91
>04_02_0033 - 8997041-8997754
Length = 237
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 277 PNAKFPVSRRRARYLVLPPRDLTKWMRWGPSLVLQP 170
PN P S R+ L PR +TK WG S QP
Sbjct: 75 PNPSRPQSAPRSAARSLSPRHVTKTKIWGNSTARQP 110
>02_01_0463 - 3336485-3336921,3337415-3337454,3338794-3339045
Length = 242
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +3
Query: 3 LREQSWSSTGGGV*TMDPGLRIRTRQMGISRDHWHKRGLRRQTCA 137
LRE+ + G GV MDPG + T +G R RGL R A
Sbjct: 142 LRERKCRTAGDGVVEMDPGSHL-TFDLGYYRAVLRHRGLLRSDAA 185
>10_06_0175 -
11490280-11491000,11491869-11491947,11493613-11493811,
11494003-11494044
Length = 346
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -1
Query: 125 PP*PSLMPMITTDTHLPRPNSQPGIHSLDAATRGAPAL 12
PP PSL + P P +QP + SL A G PAL
Sbjct: 129 PPQPSLGWSPNLNLPYPLPPTQPTVVSLPAPRSGGPAL 166
>02_02_0694 + 13013966-13014361
Length = 131
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 82 WVSVVIIGIREGYGGKRAPIRKRGSMIGRPAATLSL 189
W++V+ + YGG+ R+R ++ PA L L
Sbjct: 15 WLAVLTFALHGYYGGRLGSARRRNILLQHPALALHL 50
>05_07_0165 + 28107093-28108457
Length = 454
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 579 CGIAPPDHPLPWTGAACS 526
C +PPD+ LPW AA S
Sbjct: 248 CTYSPPDYGLPWADAAVS 265
>02_04_0199 -
20861793-20862023,20862588-20862798,20863260-20864142,
20864363-20865608
Length = 856
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -1
Query: 182 SVAAGRPIILPLLRMGARLPP*PSLMPMITTDTHLPRPNSQPGIHSLDAATRGAP 18
+VAA +P R PP P P++++ T P P G +AA R P
Sbjct: 449 TVAAAAAAGMPPRRRRRVRPPLPPSPPLLSSTTATPPPTPPVGTPKSEAADRRPP 503
>01_02_0122 +
11348686-11348948,11350492-11350587,11351513-11351524,
11354009-11354699
Length = 353
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 488 KQKTQSKDSEEVPEQAAPVQGRGWSGGAIPHWTAVS 595
K +T+ KD PE A G G GG I + +A S
Sbjct: 192 KTRTKEKDKAPAPEAAHNDDGGGGGGGGIDNVSAAS 227
>09_03_0103 - 12383585-12384700
Length = 371
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = -1
Query: 488 YDGFLSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSILYQGFGTHQFIVRGIINNIN 312
+D F E+ T W+Q+ +F P G+H + ++ Y ++I IN +N
Sbjct: 173 FDSFNVCCEIFTIGDKSWRQIGSFHGAPTDRGVHVNGAVYY--LTKFRYIASSRINCLN 229
>03_02_0052 +
5285061-5285106,5285711-5285754,5286317-5286539,
5286664-5286827,5286918-5288144
Length = 567
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 23 LHGWRRLNYGSRAENSDEA 79
LHGW YGS AE S A
Sbjct: 54 LHGWSAFGYGSLAEGSSPA 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,151,016
Number of Sequences: 37544
Number of extensions: 485239
Number of successful extensions: 1365
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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