Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_E09
(602 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 216 9e-57
Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical pr... 34 0.068
AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal ... 34 0.068
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 31 0.84
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 31 0.84
U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z70307-12|CAA94340.1| 405|Caenorhabditis elegans Hypothetical p... 28 5.9
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 28 5.9
AF016674-1|AAB66132.1| 160|Caenorhabditis elegans Hypothetical ... 28 5.9
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 216 bits (528), Expect = 9e-57
Identities = 109/175 (62%), Positives = 130/175 (74%), Gaps = 3/175 (1%)
Frame = +3
Query: 81 MGISRDHWHKRGLR--RQTCAHS*KRKYDRS-PGCNTKLGPQRIHLVRSRGGNTKYRALR 251
MGISRD WHKR Q H KRK++ P NTK+G R+ LVR+RGGN KYRALR
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHK-KRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALR 59
Query: 252 LDTGNFAFGDLNCSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYL 431
LD+GNF++ +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY
Sbjct: 60 LDSGNFSWASEQ-TTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYA 118
Query: 432 LPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLA 596
LPL RKK AKL+E + AI+NKKRS T KKY RQ+ + V+ L EQF+TGRLLA
Sbjct: 119 LPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLA 173
>Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical
protein F26D2.2 protein.
Length = 489
Score = 34.3 bits (75), Expect = 0.068
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Frame = +3
Query: 303 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEA 473
T+I+ + Y A E + K L+ K +I+ + + +S+ + RKK +T
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335
Query: 474 EEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRL 590
++AI ++ + KK L + + SK E LEE+ +L
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374
>AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal
complex protein SYP-1 protein.
Length = 489
Score = 34.3 bits (75), Expect = 0.068
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Frame = +3
Query: 303 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEA 473
T+I+ + Y A E + K L+ K +I+ + + +S+ + RKK +T
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335
Query: 474 EEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRL 590
++AI ++ + KK L + + SK E LEE+ +L
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 30.7 bits (66), Expect = 0.84
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 582 QCGIAPPDHPLPWTGAA-CSGTSSLSFDCV 496
+CG A P +P PW +A C T++ + +C+
Sbjct: 486 KCGCADPRYPKPWKRSAWCDSTNTTTLNCL 515
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 30.7 bits (66), Expect = 0.84
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 582 QCGIAPPDHPLPWTGAA-CSGTSSLSFDCV 496
+CG A P +P PW +A C T++ + +C+
Sbjct: 486 KCGCADPRYPKPWKRSAWCDSTNTTTLNCL 515
>U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical
protein C37H5.5 protein.
Length = 778
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +3
Query: 444 RKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEE 569
+K G A++ I K+++ KTAKKY +++L+++E L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463
>Z70307-12|CAA94340.1| 405|Caenorhabditis elegans Hypothetical
protein C39E9.11 protein.
Length = 405
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 447 KKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEE 569
KK K + EE +K+ +K AKK + +++ K+ GG+++
Sbjct: 79 KKALKKAQKEE----RKKEKKLAKKAMKVEKIPKIGGGIQK 115
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 288 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 410
CS + I ++A+NN ++ KT N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
>AF016674-1|AAB66132.1| 160|Caenorhabditis elegans Hypothetical
protein C03H5.4 protein.
Length = 160
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -1
Query: 479 FLSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSILYQGFGTH 348
FL LG LP V I RC HHD + +Y G+G +
Sbjct: 2 FLFPLVLGFLLPETLNTFVLEIQFMTRCMTHHD-AWIYNGYGCY 44
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,632,962
Number of Sequences: 27780
Number of extensions: 358627
Number of successful extensions: 957
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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