Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_E08
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 28 1.0
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ... 27 1.8
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 26 3.1
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 26 4.1
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 26 4.1
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 5.4
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 7.1
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 25 7.1
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 25 9.4
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 9.4
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 25 9.4
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 223 ETIVTIVRHVGHEHVDRVIDNSLEQLAALYRAIEP 119
+T+VTI+ GH++ R+ S + L+ IEP
Sbjct: 308 KTVVTILCDSGHKYATRLFSRSFLESKKLFDVIEP 342
>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 242
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 239 ESVVKFLRCWTNVRL 283
E +F+RCWTNVR+
Sbjct: 189 EKSKEFIRCWTNVRM 203
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 26.2 bits (55), Expect = 3.1
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 170 NPINVFMTHMSNYGNDRLALYTFESVVKFLRCWTN-VRLASAPPLTLAEKYFQLRPDELN 346
NPI+V H + N + V F+ N V L S L LA KY+Q D +N
Sbjct: 725 NPISVL--HTQSIANVAVLFEVLSPSVIFIEKDGNLVGLISKKDLLLASKYYQEDNDLVN 782
Query: 347 P 349
P
Sbjct: 783 P 783
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 452 FFAARRLTTSVMCRTICSWPIYGDDECRRMD 360
F AR L TS M T+C P+Y E R +
Sbjct: 194 FGFARYLQTSSMAETLCGSPLYMAPEILRYE 224
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 4.1
Identities = 7/22 (31%), Positives = 16/22 (72%)
Frame = -1
Query: 208 IVRHVGHEHVDRVIDNSLEQLA 143
I+ +GH H++R++D+ ++ A
Sbjct: 59 ILESIGHPHIERIVDSFIDNEA 80
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 345 ILYGGIHATTFVIAVYGPRANGAAHYRSC*SSGRKK 452
+LYG + + ++ + P ANG+A Y + R K
Sbjct: 1094 VLYGELEPQSHILGLDHPPANGSAQYHGMDQAIRMK 1129
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 380 DECRRMDSPIKDSVHRV*AGSIS 312
D C MD I S+H V AG +S
Sbjct: 492 DACTTMDENIIQSIHDVGAGGVS 514
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 144 PPCIERSSRCLPPGYLSRSNVCV 76
PP IE ++R P + S NVC+
Sbjct: 70 PPTIEFTTRIYHPNFDSEGNVCL 92
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 409 PFALGPYTAMTNVVAWIPP*RIQFIGSKLE 320
PFAL TA + VAWIP R + + L+
Sbjct: 331 PFALIRTTARASSVAWIPGNRTPTLVTSLQ 360
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 405 NGAAHYRSC*SSGRKKPVVQLC 470
+G HY S S GR + +QLC
Sbjct: 774 DGVGHYPSKASEGRDRASIQLC 795
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 345 FSSSGLSWKYFSASVSGGADAKRTFVQHRRNLTT 244
F SGL +Y S+ + + RT+++ RNL T
Sbjct: 147 FQPSGLVLEYLGTSMGSRSQSARTYIE--RNLDT 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,267
Number of Sequences: 5004
Number of extensions: 47676
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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