Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_E08
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0718 + 22491241-22491897,22491989-22492126,22493017-224931... 28 4.1
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 28 5.4
03_05_0556 - 25564025-25564274,25565244-25565470 28 5.4
02_02_0490 - 10879761-10879861,10879946-10880185,10880274-108803... 28 5.4
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890... 27 7.2
01_03_0147 - 13125065-13126679,13126802-13127664 27 7.2
09_02_0394 + 8531930-8531946,8532084-8532245,8532865-8533070,853... 27 9.5
08_02_0757 + 20840885-20841281,20842937-20843025,20843132-208432... 27 9.5
02_05_0723 + 31228782-31228994,31229098-31229193,31229469-312294... 27 9.5
>12_02_0718 +
22491241-22491897,22491989-22492126,22493017-22493142,
22493389-22493493,22493650-22494046,22494144-22494273,
22494358-22494652,22494736-22495005
Length = 705
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 99 DIRAGGIGSIALYRAASCSRLLSITLSTCS*PTCRTMVTIVSLC 230
D+ G+ AL A CS LL + L CS + + + I S C
Sbjct: 465 DLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFISSSC 508
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 336 SGLSWKYFSASVSGGADAKRTFV 268
SGLS+KYF A++ G A +T V
Sbjct: 154 SGLSYKYFGAALGKGRQAAKTCV 176
>03_05_0556 - 25564025-25564274,25565244-25565470
Length = 158
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 180 LIGLLITVWNSSPPCIERSSRCLPPG 103
LI L+ WNSS PC LPPG
Sbjct: 19 LIRLVSLKWNSSHPCKADEGSRLPPG 44
>02_02_0490 - 10879761-10879861,10879946-10880185,10880274-10880337,
10880426-10880731,10881098-10881312,10881417-10881711,
10882193-10882357,10882477-10882527,10882657-10883109,
10883195-10883281,10883736-10884800,10884858-10885376
Length = 1186
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = -3
Query: 533 LRTLSDWEVSVLATDA*PGTYTE--LYYRFFAARRLTTSVMCRTICSWPIYGDDECRRM 363
L L W ++VL + E Y F + +L T R C WP G+ E R +
Sbjct: 891 LNMLQGWAIAVLCSLENRMISVERIFQYMFIPSEQLLTISKSRPNCQWPTNGEIELRNL 949
>04_04_1272 -
32288142-32288456,32288538-32288670,32288780-32289020,
32289124-32289340,32289557-32289681,32290873-32292157
Length = 771
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 51 CRGRLAA-CSRIHYSWRDIRAGGIGS 125
CR R A CS + Y+ DIR GG GS
Sbjct: 384 CRARCVANCSCLAYAAADIRGGGGGS 409
>01_03_0147 - 13125065-13126679,13126802-13127664
Length = 825
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 37 GRDGVAAADLRLVHAYITPGEISGREASARSL 132
GR GVAA D RLV Y + G +A + +
Sbjct: 164 GRSGVAAVDPRLVALYADTSSLVGLDAPVKKV 195
>09_02_0394 +
8531930-8531946,8532084-8532245,8532865-8533070,
8533174-8533304,8533496-8533623,8534191-8534430,
8535112-8535358
Length = 376
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = -1
Query: 244 RLERVQSETIVTIVRHVGHEHVDRVIDNSLEQLAALYRAIEPMPPARISLQE*CMREQAA 65
+L+++ SET + + R++ + ++ +E LA A P+PP + L + +
Sbjct: 281 KLDQLMSETRIVLSRNIMDRSLKKIASVVVEDLAVQIGA--PIPPPGLPLAKLLAKVAQL 338
Query: 64 SLP 56
SLP
Sbjct: 339 SLP 341
>08_02_0757 +
20840885-20841281,20842937-20843025,20843132-20843257,
20843617-20844333,20844420-20844630,20844739-20845238,
20845998-20846023,20846393-20846531,20846579-20846660,
20846990-20847153
Length = 816
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 368 DDIRHRRIWAKSKW 409
DD+RH R WA KW
Sbjct: 524 DDLRHSREWAGGKW 537
>02_05_0723 +
31228782-31228994,31229098-31229193,31229469-31229492,
31229663-31229881,31229957-31230025,31230230-31230316,
31231122-31231226
Length = 270
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 105 GYLSRSNVCVNKPQVCRGNTITPLCRKPRRNL 10
G SR ++ V +VC + PLCR RR+L
Sbjct: 14 GLGSRPSLTVKTSRVCTTAALPPLCRCGRRHL 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,114,355
Number of Sequences: 37544
Number of extensions: 359573
Number of successful extensions: 1111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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