Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_E08
(535 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U52002-7|AAB37730.3| 715|Caenorhabditis elegans Heparan sulphot... 205 1e-53
AB038044-1|BAB62394.1| 852|Caenorhabditis elegans N-deacetylase... 205 1e-53
AB037943-1|BAB61758.1| 696|Caenorhabditis elegans N-deacetylase... 205 1e-53
AB037942-1|BAB61757.1| 814|Caenorhabditis elegans N-deacetylase... 205 1e-53
AB037941-1|BAB61756.1| 826|Caenorhabditis elegans N-deactylase/... 205 1e-53
Z82285-6|CAB05299.1| 252|Caenorhabditis elegans Hypothetical pr... 30 0.91
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z48795-6|CAA88730.1| 203|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 27 8.5
>U52002-7|AAB37730.3| 715|Caenorhabditis elegans Heparan
sulphotransferase protein 1 protein.
Length = 715
Score = 205 bits (501), Expect = 1e-53
Identities = 93/178 (52%), Positives = 122/178 (68%), Gaps = 2/178 (1%)
Frame = +2
Query: 8 ARLRRGFRHRGVMVLPRQTCGLFTHTLLLERYPGGRHRLDRSIQGGELFQTVINNPINVF 187
A R+GF H G+ VLPRQTCGL+THT L + YP G ++ +SI+GG+LF T++ NPI++F
Sbjct: 306 ATARKGFIHAGIHVLPRQTCGLYTHTQLFDEYPEGFDKVQKSIEGGDLFFTILLNPISIF 365
Query: 188 MTHMSNYGNDRLALYTFESVVKFLRCWTNVRLASAPPLTLAEKYFQLRPDELNPLWGNPC 367
MTH NY DRLALYTFE++ +F++CWTN++L PLT ++ YFQ PDE PLW NPC
Sbjct: 366 MTHQQNYAYDRLALYTFENLFRFIKCWTNIKLKWQDPLTSSQLYFQKFPDERTPLWTNPC 425
Query: 368 DDIRHRRIWAKSKWC--GTLPKLLVVGPQKTGSTALYTFLAMHXXXXXXXXXXXXYEE 535
D RH I S C +LP LL++GPQKTGSTAL +FL++H +EE
Sbjct: 426 TDPRHHAILPPSINCTKKSLPDLLIIGPQKTGSTALASFLSLHPNTSQNTPVPGSFEE 483
>AB038044-1|BAB62394.1| 852|Caenorhabditis elegans
N-deacetylase/N-sulfotransferase protein.
Length = 852
Score = 205 bits (501), Expect = 1e-53
Identities = 93/178 (52%), Positives = 122/178 (68%), Gaps = 2/178 (1%)
Frame = +2
Query: 8 ARLRRGFRHRGVMVLPRQTCGLFTHTLLLERYPGGRHRLDRSIQGGELFQTVINNPINVF 187
A R+GF H G+ VLPRQTCGL+THT L + YP G ++ +SI+GG+LF T++ NPI++F
Sbjct: 443 ATARKGFIHAGIHVLPRQTCGLYTHTQLFDEYPEGFDKVQKSIEGGDLFFTILLNPISIF 502
Query: 188 MTHMSNYGNDRLALYTFESVVKFLRCWTNVRLASAPPLTLAEKYFQLRPDELNPLWGNPC 367
MTH NY DRLALYTFE++ +F++CWTN++L PLT ++ YFQ PDE PLW NPC
Sbjct: 503 MTHQQNYAYDRLALYTFENLFRFIKCWTNIKLKWQDPLTSSQLYFQKFPDERTPLWTNPC 562
Query: 368 DDIRHRRIWAKSKWC--GTLPKLLVVGPQKTGSTALYTFLAMHXXXXXXXXXXXXYEE 535
D RH I S C +LP LL++GPQKTGSTAL +FL++H +EE
Sbjct: 563 TDPRHHAILPPSINCTKKSLPDLLIIGPQKTGSTALASFLSLHPNTSQNTPVPGSFEE 620
>AB037943-1|BAB61758.1| 696|Caenorhabditis elegans
N-deacetylase/N-sulfotransferase protein.
Length = 696
Score = 205 bits (501), Expect = 1e-53
Identities = 93/178 (52%), Positives = 122/178 (68%), Gaps = 2/178 (1%)
Frame = +2
Query: 8 ARLRRGFRHRGVMVLPRQTCGLFTHTLLLERYPGGRHRLDRSIQGGELFQTVINNPINVF 187
A R+GF H G+ VLPRQTCGL+THT L + YP G ++ +SI+GG+LF T++ NPI++F
Sbjct: 287 ATARKGFIHAGIHVLPRQTCGLYTHTQLFDEYPEGFDKVQKSIEGGDLFFTILLNPISIF 346
Query: 188 MTHMSNYGNDRLALYTFESVVKFLRCWTNVRLASAPPLTLAEKYFQLRPDELNPLWGNPC 367
MTH NY DRLALYTFE++ +F++CWTN++L PLT ++ YFQ PDE PLW NPC
Sbjct: 347 MTHQQNYAYDRLALYTFENLFRFIKCWTNIKLKWQDPLTSSQLYFQKFPDERTPLWTNPC 406
Query: 368 DDIRHRRIWAKSKWC--GTLPKLLVVGPQKTGSTALYTFLAMHXXXXXXXXXXXXYEE 535
D RH I S C +LP LL++GPQKTGSTAL +FL++H +EE
Sbjct: 407 TDPRHHAILPPSINCTKKSLPDLLIIGPQKTGSTALASFLSLHPNTSQNTPVPGSFEE 464
>AB037942-1|BAB61757.1| 814|Caenorhabditis elegans
N-deacetylase/N-sulfotransferase protein.
Length = 814
Score = 205 bits (501), Expect = 1e-53
Identities = 93/178 (52%), Positives = 122/178 (68%), Gaps = 2/178 (1%)
Frame = +2
Query: 8 ARLRRGFRHRGVMVLPRQTCGLFTHTLLLERYPGGRHRLDRSIQGGELFQTVINNPINVF 187
A R+GF H G+ VLPRQTCGL+THT L + YP G ++ +SI+GG+LF T++ NPI++F
Sbjct: 405 ATARKGFIHAGIHVLPRQTCGLYTHTQLFDEYPEGFDKVQKSIEGGDLFFTILLNPISIF 464
Query: 188 MTHMSNYGNDRLALYTFESVVKFLRCWTNVRLASAPPLTLAEKYFQLRPDELNPLWGNPC 367
MTH NY DRLALYTFE++ +F++CWTN++L PLT ++ YFQ PDE PLW NPC
Sbjct: 465 MTHQQNYAYDRLALYTFENLFRFIKCWTNIKLKWQDPLTSSQLYFQKFPDERTPLWTNPC 524
Query: 368 DDIRHRRIWAKSKWC--GTLPKLLVVGPQKTGSTALYTFLAMHXXXXXXXXXXXXYEE 535
D RH I S C +LP LL++GPQKTGSTAL +FL++H +EE
Sbjct: 525 TDPRHHAILPPSINCTKKSLPDLLIIGPQKTGSTALASFLSLHPNTSQNTPVPGSFEE 582
>AB037941-1|BAB61756.1| 826|Caenorhabditis elegans
N-deactylase/N-sulfotransferase protein.
Length = 826
Score = 205 bits (501), Expect = 1e-53
Identities = 93/178 (52%), Positives = 122/178 (68%), Gaps = 2/178 (1%)
Frame = +2
Query: 8 ARLRRGFRHRGVMVLPRQTCGLFTHTLLLERYPGGRHRLDRSIQGGELFQTVINNPINVF 187
A R+GF H G+ VLPRQTCGL+THT L + YP G ++ +SI+GG+LF T++ NPI++F
Sbjct: 417 ATARKGFIHAGIHVLPRQTCGLYTHTQLFDEYPEGFDKVQKSIEGGDLFFTILLNPISIF 476
Query: 188 MTHMSNYGNDRLALYTFESVVKFLRCWTNVRLASAPPLTLAEKYFQLRPDELNPLWGNPC 367
MTH NY DRLALYTFE++ +F++CWTN++L PLT ++ YFQ PDE PLW NPC
Sbjct: 477 MTHQQNYAYDRLALYTFENLFRFIKCWTNIKLKWQDPLTSSQLYFQKFPDERTPLWTNPC 536
Query: 368 DDIRHRRIWAKSKWC--GTLPKLLVVGPQKTGSTALYTFLAMHXXXXXXXXXXXXYEE 535
D RH I S C +LP LL++GPQKTGSTAL +FL++H +EE
Sbjct: 537 TDPRHHAILPPSINCTKKSLPDLLIIGPQKTGSTALASFLSLHPNTSQNTPVPGSFEE 594
>Z82285-6|CAB05299.1| 252|Caenorhabditis elegans Hypothetical
protein T28F3.6 protein.
Length = 252
Score = 30.3 bits (65), Expect = 0.91
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 425 KLLVVGPQKTGSTALYTFLA 484
K+LV+GP K G T L TFLA
Sbjct: 30 KILVLGPPKAGKTTLCTFLA 49
>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical protein
F29G6.3c protein.
Length = 1453
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 190 HEHVDRVIDNSLEQLAALYR-AIEPMPPARISLQE*CMREQAASLPRQHHHAP 35
H+++ +++ ++ LY P+PP + S +A LPR+HH+ P
Sbjct: 1050 HQYLPPIVNAEQKEAVKLYEHQYVPLPPKKDSFAN--YSSKAPQLPREHHYYP 1100
>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical protein
F29G6.3b protein.
Length = 1785
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 190 HEHVDRVIDNSLEQLAALYR-AIEPMPPARISLQE*CMREQAASLPRQHHHAP 35
H+++ +++ ++ LY P+PP + S +A LPR+HH+ P
Sbjct: 1050 HQYLPPIVNAEQKEAVKLYEHQYVPLPPKKDSFAN--YSSKAPQLPREHHYYP 1100
>Z48795-6|CAA88730.1| 203|Caenorhabditis elegans Hypothetical
protein R05H5.7 protein.
Length = 203
Score = 29.1 bits (62), Expect = 2.1
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = -2
Query: 285 AKRTFVQHRRNLTTD-SNV-YRARRSLP*FDMWVMNTLIGLLITVWNSSPPCIERSSRCL 112
AK HR +T S+V + +P F+ +V NT ++I+ N C + C
Sbjct: 51 AKHKAHDHRPRVTPQLSSVPWTPAAPVPRFNSFV-NTN-SIIISNENGFGECRPHHTNCQ 108
Query: 111 PPGYLSRSNVCVNKPQVCRGN-TITPLCRKPRRNLASC 1
G S + +C++ C GN I C P +A C
Sbjct: 109 QSGQCSSNQLCIDSNGYCCGNKKIITECPSPSSLVAHC 146
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 302 TLAEKYFQLRPDELNPLWGNPCDDIRHRRIWAKSKWCGTL 421
T+ FQ PDE + +W P D + + K K GTL
Sbjct: 3984 TIQSLVFQQTPDEWDSMWAGPSDPADYLNVVVK-KTRGTL 4022
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,875,898
Number of Sequences: 27780
Number of extensions: 277872
Number of successful extensions: 883
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -