Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E07
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...   167   3e-42
U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical pr...    35   0.030
U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical pr...    32   0.28 
AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical ...    30   1.1  
AC006742-5|AAF60496.1|  239|Caenorhabditis elegans Hypothetical ...    27   6.0  
AC006742-4|AAF60495.1|  239|Caenorhabditis elegans Hypothetical ...    27   6.0  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score =  167 bits (407), Expect = 3e-42
 Identities = 73/124 (58%), Positives = 103/124 (83%)
 Frame = +1

Query: 85  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 264
           +VKK+  +F RH+SDRY ++  +WRKP+GIDNRVRRRF+G   MP IG+GS+++TR +LP
Sbjct: 11  VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLP 70

Query: 265 SGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVTNAAARLRS 444
           +G++KVLV NV++L++L+MQ+ KY  EI HGVS+K RK IVERA QL+I++TN  ARLR+
Sbjct: 71  NGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRKGIVERAAQLNIKLTNGNARLRT 130

Query: 445 QENE 456
           +E+E
Sbjct: 131 EESE 134


>U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical
           protein C14F11.4a protein.
          Length = 345

 Score = 35.1 bits (77), Expect = 0.030
 Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
 Frame = +1

Query: 73  YGPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 246
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 247 TRHMLPSGFRKV--LVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVT 420
             + L    +K+  ++  +R              ++A    +++ K I +R  +L   +T
Sbjct: 61  AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120

Query: 421 NAAARLRSQENELNYI 468
                +   +NE++ +
Sbjct: 121 GKTQFVAPLQNEISLL 136


>U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical
           protein C14F11.4b protein.
          Length = 341

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
 Frame = +1

Query: 73  YGPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 246
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 247 TRHMLPSGFRKV--LVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVT 420
             + L    +K+  ++  +R              ++A    +++ K I +R  +L   +T
Sbjct: 61  AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120

Query: 421 NAA 429
             A
Sbjct: 121 FVA 123


>AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical
           protein Y47H10A.2 protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +1

Query: 205 QYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQN 327
           QYLM NI        R   PSGF K L+  +  L+I   QN
Sbjct: 213 QYLMNNIDLKYGLLIRCWHPSGFDKELLSGIPRLDIFYAQN 253


>AC006742-5|AAF60496.1|  239|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.7 protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
 Frame = +1

Query: 280 VLVHNVRELEILMMQNRKYCAEIAHGVSSKKR--------KAIVERAQQLSIRVTNAAAR 435
           V +H +  L+ L     K+ A+    + +KK         K+   + Q L+ ++TN   R
Sbjct: 65  VALHTMNSLDELAASAPKFVADFKQAIGNKKTLKELHDNFKSSDTKQQGLNRKLTNKMER 124

Query: 436 LRSQENELNYIKYSLYFGFKKN 501
            RS+  +      S + G K+N
Sbjct: 125 NRSEMKQFKMEMMSSFNGLKQN 146


>AC006742-4|AAF60495.1|  239|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.3 protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
 Frame = +1

Query: 280 VLVHNVRELEILMMQNRKYCAEIAHGVSSKKR--------KAIVERAQQLSIRVTNAAAR 435
           V +H +  L+ L     K+ A+    + +KK         K+   + Q L+ ++TN   R
Sbjct: 65  VALHTMNSLDELAASAPKFVADFKQAIGNKKTLKELHDNFKSSDTKQQGLNRKLTNKMER 124

Query: 436 LRSQENELNYIKYSLYFGFKKN 501
            RS+  +      S + G K+N
Sbjct: 125 NRSEMKQFKMEMMSSFNGLKQN 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,716,118
Number of Sequences: 27780
Number of extensions: 242782
Number of successful extensions: 660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)