Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_E06
(543 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 33 0.036
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 0.34
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.1
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.1
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 5.5
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 25 5.5
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 5.5
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.2
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.5
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 25 9.5
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 9.5
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar... 25 9.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.5
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 32.7 bits (71), Expect = 0.036
Identities = 28/89 (31%), Positives = 37/89 (41%)
Frame = +3
Query: 258 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAPI 437
S S+P S P SP+ SPT YSP + +Y +P YS P P + A
Sbjct: 1559 SPSSPGYSTSPAYMPSSPSYSPT---SPSYSP--TSPSYSPTSPSYS-PTSPSYS--ATS 1610
Query: 438 PISIPAGASLTPVSLQHVQLVPCMCPVAP 524
P P S +P S + P P +P
Sbjct: 1611 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1639
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.5 bits (63), Expect = 0.34
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Frame = +3
Query: 222 VASSDAFFLKWG--SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQ---- 383
V+SS + W + SA PS+ W QP +P +P + P T Q
Sbjct: 416 VSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMNPSSLPPWQQPTQQSAVQPS 475
Query: 384 --APQYSQPEVPIHQNMAPIPISIPAGASLTPV 476
P + P +P P P G L P+
Sbjct: 476 NLVPSQNAPFIPGTSAPLPPTTFAPPGVPLPPI 508
>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 3.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 298 NHYLLTSPRQSVINICIRHMNRTK 369
NHY + S++N C+R++ +K
Sbjct: 22 NHYDMQREESSIVNACLRYLGYSK 45
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 300 PLSPNVSPTIRYQYMYSPYESH-KTYQLQAPQYSQPEVPIHQNMAPIPISIPAGAS 464
P+ PNV + YS S+ +TYQ A + +P AP+P+ P S
Sbjct: 142 PVRPNVMSQMPPPPSYSSSGSYSQTYQSNANYTASSPLPTASANAPLPVPPPRRVS 197
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 416 PPKYGSYTYQYSCRSEPYPGI 478
PP G+ Y+ SC S+ Y G+
Sbjct: 2134 PPAMGTLKYKLSCFSDSYMGV 2154
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 360 SHKTYQLQAPQYSQPEVPIHQNMAPIPISIPAGASLTP 473
SH ++ + P QP +H++ + + I PAG + P
Sbjct: 90 SHHAHRHEPPVSDQPVGIVHEDESYVVIDKPAGVPVHP 127
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 5.5
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Frame = +3
Query: 294 VQPLSPNVSPTIR-----YQYMYSPYESHKT-YQLQAPQYS-QPEVPIHQNMAPIPIS 446
V P +PN ++ ++ SP ES + + LQ +S +PE PI Q IP+S
Sbjct: 190 VSPSNPNFLTPLKPIDGNQEWQQSPLESPLSMHSLQESLHSVEPESPIFQQAPQIPLS 247
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 318 SPTIRYQYMYSPYESHKTYQLQAPQYSQ 401
SP+ R+ YSP TYQ + YSQ
Sbjct: 321 SPSSRFPTPYSPSVPFGTYQEKEKSYSQ 348
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 276 SSQKTWVQPLSP--NVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPI 416
SS K P +P ++SP + YSP E+ Y ++P+ S VP+
Sbjct: 653 SSPKRQSVPSTPKASLSPRVHKSMTYSPSEASPLYANKSPK-SSTMVPL 700
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 408 VPIHQNMAPIPISIPAGASLTPVSLQHVQLVPCM 509
+P+ QN +PI+I A+ + V +Q CM
Sbjct: 495 LPVFQNQFALPINIGGYANASNVQVQTAYKCACM 528
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 128 VLCSLF*TFNQNYWLQSSIKGYGRY 54
V+C L NQN+W+ + I R+
Sbjct: 1157 VICFLISVINQNFWMSTLISQAWRF 1181
>SPAC15E1.03 |rpl36a||60S ribosomal protein
L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 271 GAESDPHFKKKASDDATIAKITRKLIIRLVCM 176
G ++ P F KKA K+T+K+++RL C+
Sbjct: 51 GGQTKPVFHKKA-------KVTKKVVLRLECV 75
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 24.6 bits (51), Expect = 9.5
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +3
Query: 270 PPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAPIPISI 449
PP+ LSP+V+P + P S Q+ P +P ++ PI+
Sbjct: 1035 PPTVSVPSPSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRPPIAT 1094
Query: 450 PAGASLTPVS 479
AG S T S
Sbjct: 1095 SAGRSSTAAS 1104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,422
Number of Sequences: 5004
Number of extensions: 51708
Number of successful extensions: 156
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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