Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E05
         (94 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    24   3.1  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    23   7.1  

>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 3   EHRQRKTRADPLPLEATNSTVTVKRYKMKS 92
           ++ +++ R++P+P+E   STV   + K K+
Sbjct: 557 DNSEKEDRSNPIPVEKRASTVLNTKKKRKA 586


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 94  NDFILYLLTVTVEFVASSGRGSARVFLCR 8
           N+FI YLL   ++ V+S  +   +  + R
Sbjct: 588 NEFITYLLDFYMQLVSSQNKNPRKTAISR 616


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 279,396
Number of Sequences: 5004
Number of extensions: 1867
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 2,362,478
effective HSP length: 12
effective length of database: 2,302,430
effective search space used: 41443740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)