Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E05
         (94 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0055 + 16891212-16891848,16893166-16893206                       27   1.6  
01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820     26   4.8  

>03_04_0055 + 16891212-16891848,16893166-16893206
          Length = 225

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 26  GGSSSARGHELDGDSQKIQDE 88
           GGSSS+ GH+ D D  + +DE
Sbjct: 204 GGSSSSSGHDEDEDEDEDEDE 224


>01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820
          Length = 357

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 26  GGSSSARGHELDGDSQKIQDEV 91
           GG+ +   H  DGD Q++ D+V
Sbjct: 135 GGAGAGEEHHDDGDKQQLMDDV 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,442
Number of Sequences: 37544
Number of extensions: 16114
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 14,793,348
effective HSP length: 12
effective length of database: 14,342,820
effective search space used: 258170760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)