Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E04
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   156   2e-39
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   156   2e-39
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    31   0.062
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   1.3  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    27   1.8  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   2.3  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    26   2.3  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   4.1  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    24   9.4  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    24   9.4  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  156 bits (378), Expect = 2e-39
 Identities = 66/97 (68%), Positives = 87/97 (89%)
 Frame = +2

Query: 8   GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 187
           G ++G K+R++LGLPV A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++ATVK
Sbjct: 6   GAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVK 65

Query: 188 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAG 298
           KGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAG
Sbjct: 66  KGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAG 102



 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 28/29 (96%), Positives = 28/29 (96%)
 Frame = +3

Query: 297 GVIVNNKGEMKGSAITGPVAKECADLWPR 383
           GVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 102 GVIVNPKGEMKGSAITGPVAKECADLWPR 130


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  156 bits (378), Expect = 2e-39
 Identities = 66/97 (68%), Positives = 87/97 (89%)
 Frame = +2

Query: 8   GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 187
           G ++G K+R++LGLPV A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++ATVK
Sbjct: 6   GAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVK 65

Query: 188 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAG 298
           KGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAG
Sbjct: 66  KGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAG 102



 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 28/29 (96%), Positives = 28/29 (96%)
 Frame = +3

Query: 297 GVIVNNKGEMKGSAITGPVAKECADLWPR 383
           GVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 102 GVIVNPKGEMKGSAITGPVAKECADLWPR 130


>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 886

 Score = 31.5 bits (68), Expect = 0.062
 Identities = 24/85 (28%), Positives = 38/85 (44%)
 Frame = -2

Query: 294  ALSSKYMNTPSRLLNGFRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLFRRPLIPC 115
            ALSS+Y    S L        +T  +T  LSS     T +++ +P P    + R P  P 
Sbjct: 780  ALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPATPL 839

Query: 114  TAITYRFFAPVLSAQLITAPTGRPS 40
            +A      A  +++ LI +P   P+
Sbjct: 840  SA-ALGSAAQSITSPLIMSPAAIPA 863


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = -2

Query: 264 SRLLNGFRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLFRRPLIPCTAITYR 97
           + LLN F  L+    +T + S  + +     ++  EP    ++      C ++TYR
Sbjct: 446 TELLNSFSKLVRNDNLTLWFSEFIRWSDNPILVKNEPVDERVYLPETFECISLTYR 501


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 292 IILEIYEHPVPPSKWFPLPDHHCWHYLFP 206
           ++ EI+ HP    + FPLP       LFP
Sbjct: 438 LVSEIFRHPTHTDEDFPLPSPSLSSLLFP 466


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 185 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 295
           KKG P  RK   P+++        PF  RD +FI  E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 130 SSEQVTSCWFW*HDCGHS*ERQTRTQEKGNASSG 231
           SS ++T CWFW         R     E G A+ G
Sbjct: 366 SSNEITHCWFWPKFSEFLKPRDVLITETGTANFG 399


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +2

Query: 170 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGCHR 307
           IV    KGK  L   + P++ I       R  G  +Y ED  G  R
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGVQR 354


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 258 GGTGCSYISRIMRGVIVNNK 317
           GG  C  ++R+M  ++ NN+
Sbjct: 262 GGVDCGVLARLMHDIVPNNE 281


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -1

Query: 352 TGPVIAEPFISPLLFTMTPRIILEIYEHPV-PPSKWFPLPD 233
           T PV   P I P    +     +  YE  + PP KW P+PD
Sbjct: 509 TSPVKELPAIRPRTIPLNG---VAPYESELRPPPKWKPMPD 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,587
Number of Sequences: 5004
Number of extensions: 41172
Number of successful extensions: 117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)