Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_E04
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 174 3e-44
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 174 3e-44
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 174 3e-44
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 42 2e-04
06_03_1073 - 27373259-27373304,27373542-27373624,27373719-273743... 29 1.3
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 29 1.7
02_04_0663 + 24820745-24821065,24821415-24821861,24821949-248223... 29 1.7
12_02_0121 + 13919496-13919734,13919821-13919982,13920102-13920534 29 2.3
11_04_0068 - 13116037-13116414,13116501-13116947,13117026-131177... 29 2.3
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193 28 3.0
11_01_0122 - 960346-960728,961356-961608 28 4.0
10_05_0088 - 9037516-9037997,9038171-9038513,9039512-9039787 28 4.0
06_01_0198 + 1529190-1530371 28 4.0
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 27 5.3
02_01_0753 - 5586705-5586766,5587864-5588056,5588154-5588423,558... 27 5.3
12_02_1007 - 25248653-25249078,25249956-25250021,25250108-252502... 27 7.0
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277... 27 7.0
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688... 27 7.0
11_03_0093 - 9852075-9852871,9852911-9853009,9853208-9853646,985... 27 9.2
05_07_0317 - 29193940-29193978,29194208-29194496,29194579-291947... 27 9.2
04_01_0580 - 7539208-7539328,7539409-7539579,7539658-7540024,754... 27 9.2
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 27 9.2
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 174 bits (423), Expect = 3e-44
Identities = 77/97 (79%), Positives = 92/97 (94%)
Frame = +2
Query: 8 GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 187
GGSAG KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++ATVK
Sbjct: 7 GGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVK 66
Query: 188 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAG 298
KGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNAG
Sbjct: 67 KGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAG 103
Score = 61.7 bits (143), Expect = 3e-10
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = +3
Query: 297 GVIVNNKGEMKGSAITGPVAKECADLWPR 383
GVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 103 GVIVNPKGEMKGSAITGPIGKECADLWPR 131
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 174 bits (423), Expect = 3e-44
Identities = 77/97 (79%), Positives = 92/97 (94%)
Frame = +2
Query: 8 GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 187
GGSAG KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++ATVK
Sbjct: 7 GGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVK 66
Query: 188 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAG 298
KGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNAG
Sbjct: 67 KGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAG 103
Score = 61.7 bits (143), Expect = 3e-10
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = +3
Query: 297 GVIVNNKGEMKGSAITGPVAKECADLWPR 383
GVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 103 GVIVNPKGEMKGSAITGPIGKECADLWPR 131
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 174 bits (423), Expect = 3e-44
Identities = 77/97 (79%), Positives = 92/97 (94%)
Frame = +2
Query: 8 GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 187
GGSAG KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++ATVK
Sbjct: 24 GGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVK 83
Query: 188 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAG 298
KGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNAG
Sbjct: 84 KGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAG 120
Score = 61.7 bits (143), Expect = 3e-10
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = +3
Query: 297 GVIVNNKGEMKGSAITGPVAKECADLWPR 383
GVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 120 GVIVNPKGEMKGSAITGPIGKECADLWPR 148
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 41.9 bits (94), Expect = 2e-04
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Frame = +2
Query: 65 INCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---VMPAVVI 235
+ DN+GAK V+ +Q ++G+ A GD I+ +VK+ +P + K V+ VV+
Sbjct: 58 LKVVDNSGAKR--VMCIQSLRGK----KGARLGDTIIGSVKEAQPRGKVKKGDVVYGVVV 111
Query: 236 RQRKPFRRRDGVFIYFEDNA 295
R R DG I F+DNA
Sbjct: 112 RAAMKRGRNDGSEIQFDDNA 131
Score = 29.9 bits (64), Expect = 0.99
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 300 VIVNNKGEMKGSAITGPVAKE 362
V+VNNKGE+ G+ + GPV E
Sbjct: 133 VLVNNKGELIGTRVFGPVPHE 153
>06_03_1073 -
27373259-27373304,27373542-27373624,27373719-27374397,
27374493-27374563,27374635-27374727,27375855-27375928,
27376016-27376073,27376212-27376349
Length = 413
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -3
Query: 419 IYSSYGAGVRRNTGP*VSALLSDGSCDSRAFHLPLVVHDDTPHYPRNI*T 270
+ S Y + +R N+ ++DGS DS FH PLV+ DD PR + T
Sbjct: 169 VKSVYQSAIRGNSPFQNIKSINDGSSDS-PFHTPLVLRDDM-QTPRTVYT 216
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 90 APVLSAQLITAPTGRPSEMRNFAPAEPPS 4
AP S+ L TAP P++ + FAP PPS
Sbjct: 328 APNASSSLFTAPV--PADRQQFAPPPPPS 354
>02_04_0663 +
24820745-24821065,24821415-24821861,24821949-24822317,
24822324-24822835,24822914-24823084,24823284-24823434,
24823664-24823702
Length = 669
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 81 LSAQLITAPTGRPSEMRNFAPAEPPS 4
++A+ TAP GRP + FAP+ PP+
Sbjct: 345 VTARPTTAPGGRPPKRPAFAPSAPPA 370
>12_02_0121 + 13919496-13919734,13919821-13919982,13920102-13920534
Length = 277
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -1
Query: 340 IAEPFISPLLFTMTPRIILEIYEHPVPPSKWFPLPDHHCWHYLF 209
IA L + MTP +L + P PS PDH CW F
Sbjct: 178 IAGRHCEKLRWPMTPLSMLPMSIPPPRPSLQADPPDHRCWQIHF 221
>11_04_0068 -
13116037-13116414,13116501-13116947,13117026-13117757,
13118235-13118348
Length = 556
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 81 LSAQLITAPTGRPSEMRNFAPAEPPS 4
++A TAP GRP + FAP+ PP+
Sbjct: 514 VTASPTTAPGGRPPKRPAFAPSAPPA 539
>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
Length = 476
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +2
Query: 11 GSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAG 157
GSA A + L A + +TG GI G L+RLPA G
Sbjct: 327 GSAAAIMSATALLQKAAELGATTSTGCYGGVAFPAMGIAGGLDRLPAIG 375
>11_01_0122 - 960346-960728,961356-961608
Length = 211
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 407 YGAGVRRNTGP*VSALLSDGSCDSRAFHLPLVVH 306
YGAG R G +A LSDG C +R L L+ H
Sbjct: 62 YGAGGARARGS--AAALSDGVCGARVQQLHLLQH 93
>10_05_0088 - 9037516-9037997,9038171-9038513,9039512-9039787
Length = 366
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 81 LSAQLITAPTGRPSEMRNFAPAEP 10
++A+ TAP+GRP FAP+ P
Sbjct: 295 ITARPTTAPSGRPPRRPTFAPSAP 318
>06_01_0198 + 1529190-1530371
Length = 393
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 210 FLSSGLPFLTVATIMSPEPAAGNLFRRPLIPCTAITYRFF 91
+L++ L L VAT++S P AG L +P T F+
Sbjct: 171 YLAAALGALLVATLLSSSPFAGALASLAALPATRFARSFW 210
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 309 NNKGEMKGSAITGPVAKECAD 371
N+KG +GS ITG + + CA+
Sbjct: 725 NDKGSNQGSFITGKIVESCAE 745
>02_01_0753 -
5586705-5586766,5587864-5588056,5588154-5588423,
5588522-5588687,5589049-5589209,5590065-5590181,
5590269-5590549,5590750-5590833,5591100-5592542,
5593167-5593575
Length = 1061
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 216 TFFLSSGLPFLTVATIMSPEPAAGNLFRRPLIPC 115
T+ ++G F ++++ SPE GN F+ ++ C
Sbjct: 422 TYLKAAGNSFAVLSSVSSPEVPCGNCFKVEILYC 455
>12_02_1007 -
25248653-25249078,25249956-25250021,25250108-25250260,
25250961-25251336,25252001-25252143
Length = 387
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 195 LPFLTVATIMSPEPAAGNLFRRPLIPCTAITYR 97
LP+ ++ P PAA L+ RP P + R
Sbjct: 333 LPYPPYPAVLLPPPAAATLYGRPPAPAPGVAAR 365
>09_06_0199 +
21526872-21527250,21527431-21527594,21527673-21527736,
21528001-21528134,21528302-21528385,21528526-21528600,
21528683-21528754,21528852-21528925,21529185-21529282,
21529355-21529464,21529794-21529862,21529944-21530018,
21530519-21530611,21530690-21530769,21530877-21530976,
21531150-21531586,21531676-21531706,21532873-21533822,
21533982-21534201
Length = 1102
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -1
Query: 310 FTMTPRIILEIYEHPVPPSKWFPLPDHHCWHYLFP-EFWFAFLN 182
F IL Y+H +P L + HC + P + W F+N
Sbjct: 730 FIQQTATILGCYDHLLPEHIRLDLQEQHCNDHKVPDDLWLEFIN 773
>01_03_0103 - 12567986-12568141,12568307-12568442,12568751-12568824,
12568932-12569175,12569480-12569766,12570618-12571103,
12571348-12571459,12571540-12571745,12573071-12573276,
12573831-12574162,12574284-12574825,12574967-12576308,
12576386-12576457,12578438-12578505,12579011-12580174
Length = 1808
Score = 27.1 bits (57), Expect = 7.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 259 PSKWFPLPDHHCW 221
P WFP PD +CW
Sbjct: 1420 PWFWFPSPDRNCW 1432
>11_03_0093 -
9852075-9852871,9852911-9853009,9853208-9853646,
9853803-9854129
Length = 553
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 240 SGNHLEGGTGCSYISRIMRGVI 305
S NHL+ TG ++ S+++RG +
Sbjct: 123 SRNHLDAATGGAFFSKMVRGAV 144
>05_07_0317 -
29193940-29193978,29194208-29194496,29194579-29194749,
29194829-29195715,29195803-29196249,29196328-29197056
Length = 853
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 81 LSAQLITAPTGRPSEMRNFAPAEPPS 4
++A+ TAP GRP + AP+ PP+
Sbjct: 481 VTARPTTAPGGRPPKRPTSAPSAPPA 506
>04_01_0580 -
7539208-7539328,7539409-7539579,7539658-7540024,
7540093-7540516
Length = 360
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 75 AQLITAPTGRPSEMRNFAPAEPPS 4
A+ TAP+GRP + + AP PP+
Sbjct: 80 ARPTTAPSGRPPKRPDSAPLAPPA 103
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 56 GAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSG 163
GA CA+ T A + +A +GI+G N P G G
Sbjct: 625 GAGAGCANQTAAVRVDGVAYRGIRGTYN--PRGGGG 658
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,808,104
Number of Sequences: 37544
Number of extensions: 321350
Number of successful extensions: 986
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -