Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E04
         (451 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   171   2e-43
Z68303-12|CAA92644.2|  969|Caenorhabditis elegans Hypothetical p...    31   0.51 
Z68303-1|CAC42387.1|  475|Caenorhabditis elegans Hypothetical pr...    31   0.51 
Z68302-9|CAA92636.2|  969|Caenorhabditis elegans Hypothetical pr...    31   0.51 
AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical...    28   2.7  
Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical p...    28   3.6  
Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AF034078-1|AAC02976.1|  815|Caenorhabditis elegans putative E1-E...    28   3.6  
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    27   6.3  
AC199160-2|ABO33282.1|  222|Caenorhabditis elegans Hypothetical ...    27   6.3  
U23452-1|AAK31545.2|  284|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  171 bits (416), Expect = 2e-43
 Identities = 79/97 (81%), Positives = 89/97 (91%)
 Frame = +2

Query: 8   GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 187
           GG++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM V +VK
Sbjct: 7   GGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVK 66

Query: 188 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAG 298
           KGKPELRKKV+  VVIRQRK FRR+DG FIYFEDNAG
Sbjct: 67  KGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAG 103



 Score = 66.9 bits (156), Expect = 6e-12
 Identities = 29/29 (100%), Positives = 29/29 (100%)
 Frame = +3

Query: 297 GVIVNNKGEMKGSAITGPVAKECADLWPR 383
           GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131


>Z68303-12|CAA92644.2|  969|Caenorhabditis elegans Hypothetical
           protein ZK792.1a protein.
          Length = 969

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -1

Query: 370 SAHSLATGP---VIAEPFISPLLFTMTPRIILEIYEH 269
           S H +  GP   V+  PF+ P  +T   RI+ EIYEH
Sbjct: 380 SGHDVTVGPILRVLGIPFVDPPHYTS--RIVFEIYEH 414


>Z68303-1|CAC42387.1|  475|Caenorhabditis elegans Hypothetical
           protein ZK792.1b protein.
          Length = 475

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -1

Query: 370 SAHSLATGP---VIAEPFISPLLFTMTPRIILEIYEH 269
           S H +  GP   V+  PF+ P  +T   RI+ EIYEH
Sbjct: 380 SGHDVTVGPILRVLGIPFVDPPHYTS--RIVFEIYEH 414


>Z68302-9|CAA92636.2|  969|Caenorhabditis elegans Hypothetical
           protein ZK792.1a protein.
          Length = 969

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -1

Query: 370 SAHSLATGP---VIAEPFISPLLFTMTPRIILEIYEH 269
           S H +  GP   V+  PF+ P  +T   RI+ EIYEH
Sbjct: 380 SGHDVTVGPILRVLGIPFVDPPHYTS--RIVFEIYEH 414


>AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical
           protein Y66D12A.5 protein.
          Length = 729

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +2

Query: 41  LGLPVGAVINC-ADNTGAKNLYVIAVQG---IKGRLNRLPAAGSGDMIVATVKKGKPELR 208
           L L  G V  C +D    KN  + +  G   + G+LNR        M+ +T  K   +L 
Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512

Query: 209 KKVM-PAVVIRQRKPFRRRDGVFIYFEDN 292
             V  P     +RK   +RD  F Y+ED+
Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541


>Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical
           protein Y49E10.11b protein.
          Length = 1089

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 316 LLFTMTPRIILEIYEHPVPPSKWFPLP 236
           ++FT  P ++L +++HPVP  +    P
Sbjct: 862 VIFTAWPPVVLGLFDHPVPAEQIMKYP 888


>Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical
           protein Y49E10.11a protein.
          Length = 1139

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 316 LLFTMTPRIILEIYEHPVPPSKWFPLP 236
           ++FT  P ++L +++HPVP  +    P
Sbjct: 862 VIFTAWPPVVLGLFDHPVPAEQIMKYP 888


>AF034078-1|AAC02976.1|  815|Caenorhabditis elegans putative E1-E2
           ATPase protein.
          Length = 815

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 316 LLFTMTPRIILEIYEHPVPPSKWFPLP 236
           ++FT  P ++L +++HPVP  +    P
Sbjct: 538 VIFTAWPPVVLGLFDHPVPAEQIMKYP 564


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
            protein F53H1.4a protein.
          Length = 1370

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 313  TRGR*KARLSQDPSLRSALTYGPVLRLTPAP 405
            TRGR  A+   + ++R  L +  VLR TPAP
Sbjct: 1217 TRGR-SAKRKANAAMRDVLEFEGVLRQTPAP 1246


>AC199160-2|ABO33282.1|  222|Caenorhabditis elegans Hypothetical
           protein CE7X_3.2 protein.
          Length = 222

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 313 TRGR*KARLSQDPSLRSALTYGPVLRLTPAP 405
           TRGR  A+   + ++R  L +  VLR TPAP
Sbjct: 90  TRGR-SAKRKANAAMRDVLEFEGVLRQTPAP 119


>U23452-1|AAK31545.2|  284|Caenorhabditis elegans Hypothetical
           protein R07G3.5 protein.
          Length = 284

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 244 PLPDHHCWHYLFPEFW 197
           P+PDH  W  L PEF+
Sbjct: 178 PVPDHKTWRPLDPEFY 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,046,010
Number of Sequences: 27780
Number of extensions: 248615
Number of successful extensions: 687
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)