Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E03
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   251   6e-68
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   117   1e-27
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   113   2e-26
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    64   1e-11
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    28   0.83 
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    27   1.9  
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    26   4.4  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    25   5.9  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  251 bits (614), Expect = 6e-68
 Identities = 111/138 (80%), Positives = 128/138 (92%)
 Frame = +3

Query: 18  ELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPN 197
           ELTQQMFDA NMM A DPRHGRYLTVAA+FRG++SMKEVDEQ+ ++Q KNS+YFVEWIP+
Sbjct: 288 ELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPD 347

Query: 198 NVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEME 377
           NV  AVC +PP+ LKM+ATFIGNST+IQE+F+R+ +QF+AMFRRKAFLHWYTGEGMDEME
Sbjct: 348 NVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEME 407

Query: 378 FTEAESNMNDLVSEYQQY 431
           FTEAESNMNDLVSEYQQY
Sbjct: 408 FTEAESNMNDLVSEYQQY 425


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  117 bits (281), Expect = 1e-27
 Identities = 51/145 (35%), Positives = 84/145 (57%), Gaps = 8/145 (5%)
 Frame = +3

Query: 18  ELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPN 197
           E+T Q F+  N M  CDPR GRY+    ++RG +  ++V   +  I+ K +  FV+W P 
Sbjct: 290 EITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPT 349

Query: 198 NVKTAVCDIPPRGLK--------MAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 353
             K  +CD PP+ ++         A   + N+T+I E + R+  +F  M+ ++AF+HWY 
Sbjct: 350 GFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYV 409

Query: 354 GEGMDEMEFTEAESNMNDLVSEYQQ 428
           GEGM+E EF+EA  ++  L  +Y++
Sbjct: 410 GEGMEEGEFSEAREDLAALERDYEE 434


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  113 bits (271), Expect = 2e-26
 Identities = 49/145 (33%), Positives = 84/145 (57%), Gaps = 8/145 (5%)
 Frame = +3

Query: 18  ELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPN 197
           E+T Q F+  N M  CDPR GRY+    ++RG +  ++V   + +I+++ +  FV+W P 
Sbjct: 294 EITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPT 353

Query: 198 NVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 353
             K  +C  PP+         +  A   + N+T+I E + R+  +F  M+ ++AF+HWY 
Sbjct: 354 GFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYV 413

Query: 354 GEGMDEMEFTEAESNMNDLVSEYQQ 428
           GEGM+E EF+EA  ++  L  +Y++
Sbjct: 414 GEGMEEGEFSEAREDLAALERDYEE 438


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 35/143 (24%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
 Frame = +3

Query: 18  ELTQQMFDAKNMMAACDP-RHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIP 194
           ++ +++   KN M + +P +   ++++  I +G     +V + +L I+ +  + F+ W P
Sbjct: 294 DVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGP 353

Query: 195 NNVKTAVCDIPP---RGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGM 365
            +++ A+    P      +++   + N T+I  LFKR  +Q+  + +R AFL  Y  E +
Sbjct: 354 ASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAI 413

Query: 366 DEMEFTEAESNMN---DLVSEYQ 425
            E +  E +S+ +   DL++EY+
Sbjct: 414 FEDDLNEFDSSRDVVADLINEYE 436


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 264 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 371
           NS+ IQ L K I+   T  +R    ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 102 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG--NSTA 275
           ++  + ++ + +  ++NI+  N S    W+PN +      +P  G K++   I   N  +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402

Query: 276 IQELFK 293
            +EL++
Sbjct: 403 KEELYE 408


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 81  RYLTVAAIFRGRMSMKEVDEQMLNIQNKN--SSYFVEWIPNNVK 206
           RYLT   + +  +++K V + +LN  N++   + F+ W P   K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +3

Query: 81  RYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPN 197
           +Y+   ++F G +          NI N   S   EW+PN
Sbjct: 29  QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,752,610
Number of Sequences: 5004
Number of extensions: 29491
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)