Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_E02
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 79 4e-16
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 79 5e-16
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 4.1
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 25 5.4
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 25 5.4
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 25 5.4
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 25 5.4
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 25 7.1
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 25 7.1
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 25 7.1
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 79.0 bits (186), Expect = 4e-16
Identities = 37/44 (84%), Positives = 41/44 (93%)
Frame = +3
Query: 9 RRLVRVGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 140
RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKS
Sbjct: 78 RRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKS 121
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 78.6 bits (185), Expect = 5e-16
Identities = 37/44 (84%), Positives = 41/44 (93%)
Frame = +3
Query: 9 RRLVRVGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 140
RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKS
Sbjct: 78 RRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKS 121
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1
Query: 102 DGAPRSPQSSNRAHNPVSSVSHQALRP 22
DGA S Q+ AHNP +SVS + +RP
Sbjct: 90 DGA--SSQNDAFAHNPSTSVSVELVRP 114
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = -2
Query: 386 SINDWL*SCIVSYVALPSCISLRELIETFQDIELNKVEIQVVFM 255
++N L CI YV CI R+ ++ I+ + +F+
Sbjct: 140 ALNQTLQECIEEYVFSSECIKYRQFYSVYEIIDFLRTNFYRLFV 183
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = -2
Query: 386 SINDWL*SCIVSYVALPSCISLRELIETFQDIELNKVEIQVVFM 255
++N L CI YV CI R+ ++ I+ + +F+
Sbjct: 140 ALNQTLQECIEEYVFSSECIKYRQFYSVYEIIDFLRTNFYRLFV 183
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = -2
Query: 386 SINDWL*SCIVSYVALPSCISLRELIETFQDIELNKVEIQVVFM 255
++N L CI YV CI R+ ++ I+ + +F+
Sbjct: 112 ALNQTLQECIEEYVFSSECIKYRQFYSVYEIIDFLRTNFYRLFV 155
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = -2
Query: 386 SINDWL*SCIVSYVALPSCISLRELIETFQDIELNKVEIQVVFM 255
++N L CI YV CI R+ ++ I+ + +F+
Sbjct: 140 ALNQTLQECIEEYVFSSECIKYRQFYSVYEIIDFLRTNFYRLFV 183
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -1
Query: 483 DSSLAAVKNVNTLSIIILSRKLVVHLI 403
D S+AA+ +NTLS +ILS + V ++
Sbjct: 618 DKSIAAIGILNTLSTMILSLENTVDVL 644
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 7.1
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 110 SGVQGWSCEVNPSCP 154
+G++GWS EV+P+ P
Sbjct: 385 AGLKGWSTEVDPNFP 399
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 362 CIVSYVALPSC-ISLRELIETFQDIELNKVEIQVVFMKN 249
CIVSY +L SC +++ EL+ + +Q V KN
Sbjct: 3 CIVSYKSLRSCLVNVPELLLESISEPVQNYAVQAVVCKN 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,432
Number of Sequences: 5004
Number of extensions: 40797
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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