Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E02
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192     60   1e-09
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511     60   1e-09
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296...    60   1e-09
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396...    52   4e-07
08_02_1516 + 27639696-27640400                                         29   3.1  
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022           28   4.1  

>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
          Length = 195

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 29/44 (65%), Positives = 35/44 (79%)
 Frame = +3

Query: 9   RRLVRVGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 140
           RR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKS
Sbjct: 80  RRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKS 123


>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
          Length = 218

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 29/44 (65%), Positives = 35/44 (79%)
 Frame = +3

Query: 9   RRLVRVGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 140
           RR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKS
Sbjct: 103 RRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKS 146


>03_01_0382 +
           2961665-2961672,2962504-2962557,2962935-2963004,
           2963141-2963386,2967246-2967491,2968837-2968888,
           2969270-2969651,2970527-2970681,2971389-2971713,
           2975803-2975871,2976189-2976346,2976444-2976551,
           2976659-2977131
          Length = 781

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 29/44 (65%), Positives = 35/44 (79%)
 Frame = +3

Query: 9   RRLVRVGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 140
           RR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKS
Sbjct: 296 RRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKS 339


>03_03_0147 +
           14838707-14838734,14839316-14839430,14839464-14839697,
           14840571-14840667
          Length = 157

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 26/44 (59%), Positives = 31/44 (70%)
 Frame = +3

Query: 9   RRLVRVGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 140
           R + R G+L E Q KLDYVL L +E+FL+ RLQT VFK G  KS
Sbjct: 69  RHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKS 112


>08_02_1516 + 27639696-27640400
          Length = 234

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = -2

Query: 365 SCIVSYVALPSCISLRELIETFQDIELNKVEIQVVFMKNICHGDSLQRLSSIY*Q--RAI 192
           +C +  V+LPS    R+  E   + EL  +E  +         D L+RL  +Y Q    I
Sbjct: 2   ACHLRSVSLPS---KRQSNEAEIEDELQSLEASISSPSTTI--DGLRRLGDVYNQIEEMI 56

Query: 191 CSSPNMPLSDQDAGMMD*LRKTSLEHLSLKTALQE 87
               N   S Q   M+D   + SLE + L +A+QE
Sbjct: 57  HLPSNQVFSAQQRKMLDGEMECSLELIDLCSAMQE 91


>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
          Length = 587

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 110 SGVQGWSCEVNPSCPHLDQTEAY 178
           +GV  WS  VNPS  +L  TEA+
Sbjct: 107 AGVSTWSLRVNPSSGNLHPTEAH 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,922,598
Number of Sequences: 37544
Number of extensions: 256648
Number of successful extensions: 556
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)