Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E02
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.85 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.85 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 300 KCFY*LSQGD-ARR*GYI*NNTASQPVIYTFITKTKSDGPQVSL 428
           +C    S+GD A+    +    A   ++Y+FI +T   GP VSL
Sbjct: 398 QCIVRRSEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAVSL 441


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 300 KCFY*LSQGD-ARR*GYI*NNTASQPVIYTFITKTKSDGPQVSL 428
           +C    S+GD A+    +    A   ++Y+FI +T   GP VSL
Sbjct: 398 QCIVRRSEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAVSL 441


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -1

Query: 108 SEDGAPRSPQSSNR 67
           S +G+PRSP+S++R
Sbjct: 318 SNNGSPRSPESNSR 331


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = -2

Query: 338 PSCISLRELIETFQDIELNKVEIQVVFMKNIC 243
           P+ I++ +++E  +D ++    +   F+K IC
Sbjct: 72  PNIIAIPDVVEAAKDADILTFVVPHQFIKRIC 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,061
Number of Sequences: 438
Number of extensions: 2642
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)