Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_E01
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 47 1e-05
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 36 0.025
01_06_1402 + 37052996-37053449,37053533-37053630,37053718-370538... 31 0.95
01_06_0937 + 33175966-33178020 29 3.8
10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708 28 5.1
04_04_1342 + 32775582-32775796,32776589-32776794,32777356-327774... 28 5.1
04_04_0049 - 22356139-22357649,22357764-22357995 28 5.1
03_05_1161 - 30831043-30831151,30831641-30831759,30831880-308319... 28 6.7
06_01_0673 - 4908496-4908563,4908646-4908712,4908821-4908922,490... 27 8.9
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 47.2 bits (107), Expect = 1e-05
Identities = 40/131 (30%), Positives = 53/131 (40%), Gaps = 10/131 (7%)
Frame = +3
Query: 246 VFVVGVGMTNFIKPSTGG---DYPELGKEAVLAALAD-ARIKYDDIQQAVCGYVFGDST- 410
V VV T K GG YPE VL A+ D +I +I V G V G +
Sbjct: 49 VVVVAAYRTPICKAKRGGFKDTYPEDLLTVVLKAVLDNTKINPGEIGDIVVGTVLGPGSQ 108
Query: 411 ----CGQRVLYQVGMTGIPIYNVNNNCSTGSNALFLSKQLIEGGICDVALAVGFEKMSPG 578
C Y +P+ VN CS+G A+ I+ G D+ + G E MS
Sbjct: 109 RAIECRAAAFYAGVPENVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMSVN 168
Query: 579 ALA-SGFVNDR 608
A+ G VN +
Sbjct: 169 AMGWEGQVNPK 179
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 35.9 bits (79), Expect = 0.025
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 9/118 (7%)
Frame = +3
Query: 246 VFVVGVGMTNFIKPSTGG--DYP-ELGKEAVLAALAD-ARIKYDDIQQAVCGYVFGDST- 410
V +V T K GG D P E V AL D ++ ++ V G V +
Sbjct: 51 VVIVAAYRTAICKSKRGGFKDTPAEDLLVPVFKALIDKTKLNPSEVGDIVVGTVLAPGSQ 110
Query: 411 ----CGQRVLYQVGMTGIPIYNVNNNCSTGSNALFLSKQLIEGGICDVALAVGFEKMS 572
C Y +P+ VN CS+G A+ I+ G+ D+ +A G E M+
Sbjct: 111 RAIECRMAAFYAGFPDTVPLMTVNRQCSSGLQAVANVASNIKAGLYDIGIAAGLESMT 168
>01_06_1402 +
37052996-37053449,37053533-37053630,37053718-37053888,
37054017-37054117,37054928-37055063,37055155-37055205,
37055311-37055598,37055896-37056130,37056408-37056523,
37057300-37057496,37057739-37057745
Length = 617
Score = 30.7 bits (66), Expect = 0.95
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 607 LSLTNPLARAPGDIFSNPTARATSHMPPSMSCLDKNSAFEP 485
+SL P A AP D+ S P AR S +PP + N+ +P
Sbjct: 57 VSLPRP-AEAPSDLESGPPARPNSALPPPPAAAAANAEAKP 96
>01_06_0937 + 33175966-33178020
Length = 684
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 449 TGHTNLVQDSLAASRITEYITTDCLLNVVVFDACVSQSGQHGFL 318
TG N + AA + E + DC NVV F+ VS Q G +
Sbjct: 465 TGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLM 508
>10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708
Length = 567
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 479 TVVVHIVDRYTGHTNLVQDSLAASRITEYITTDCLLNVV 363
+ V H+ R+ G +Q++L ASR+ Y +LN V
Sbjct: 481 STVAHVTRRHGGGGGWIQNNLNASRLDHYYAFFAVLNCV 519
>04_04_1342 +
32775582-32775796,32776589-32776794,32777356-32777492,
32778758-32778860,32778961-32779079,32779282-32779346,
32779426-32779642,32779713-32779934
Length = 427
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +3
Query: 309 ELGKEAVLAALADARIKYDDIQQAVCGYVFGDSTCG--QRVLYQVGMTGIPIYNVNNNCS 482
EL +A AL A++ DD+ + D G +VL +VG +++ CS
Sbjct: 147 ELSVQAAKKALEMAQVNADDVDLVLLCTSTPDDLFGGAAQVLAEVGCANAFGFDITAACS 206
Query: 483 TGSNALFLSKQLIEGGICDVALAVGFEKMS 572
L + + I+GG L +G + +S
Sbjct: 207 GFIIGLITATRFIKGGGIRNILVIGADALS 236
>04_04_0049 - 22356139-22357649,22357764-22357995
Length = 580
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 441 YQPGTRLAGRKSNHRIHNHRLLAE 370
+QP T L G++S R+HN + LAE
Sbjct: 465 FQP-THLGGQRSEERMHNQKALAE 487
>03_05_1161 -
30831043-30831151,30831641-30831759,30831880-30831906,
30832117-30832158,30832293-30832392,30832481-30832545,
30832619-30832694,30832878-30832939,30833248-30833253,
30834704-30834782,30834890-30834957
Length = 250
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 427 KTRWPQVESPNT*PQTAC*MSSYLMRASARAANTASFP 314
K + QV+ T PQT+ SS++MR + N +++P
Sbjct: 181 KVQKQQVQWDQTQPQTSSSSSSFMMREALPTTNISNYP 218
>06_01_0673 -
4908496-4908563,4908646-4908712,4908821-4908922,
4909006-4909119,4909510-4909683,4909769-4910200,
4910855-4911295
Length = 465
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 435 VGMTGIPIYNVNNNCSTGSNALFLSKQLIEGGICDVALAVGFEKMSPGALASGFV 599
+G G P Y+++ C+T + + + I G DV +A G E GFV
Sbjct: 203 IGFMG-PNYSISTACATSNYCFYAAANHIRRGEADVMIAGGTEAAIIPIGVGGFV 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,080,352
Number of Sequences: 37544
Number of extensions: 349261
Number of successful extensions: 829
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -