Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E01
         (611 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.           23   5.9  
EF426165-1|ABO26408.1|  155|Anopheles gambiae unknown protein.         23   7.8  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   7.8  

>AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 568 IFSNPTARATSHMPPS 521
           ++ +PTA  T+H+PP+
Sbjct: 221 VWIDPTATTTTHVPPT 236


>EF426165-1|ABO26408.1|  155|Anopheles gambiae unknown protein.
          Length = 155

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +3

Query: 375 QAVCGYVFGDSTCGQRVLYQVGMTGIPIYNVNNNCSTGSNALFLSKQLIEGGICDVALAV 554
           +  C  V+   T G    Y   + G  ++N  + CS   NAL    ++++  +C   L  
Sbjct: 74  EPACVSVYAKGTVGGATGYAY-VRGC-LFNDKSMCSLIQNALPSEIRIVDCDLCTTELCN 131

Query: 555 GFEKMSPGALAS 590
           G   ++   L+S
Sbjct: 132 GASSVTAVTLSS 143


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = +3

Query: 252 VVGVGMTNFIKPSTGGDYPELGKEAVLAALADARIKY 362
           VVGV +T  ++  +G   P++ K  +LAA+A++ I+Y
Sbjct: 764 VVGV-VTAVMRNHSG---PQVAKRRLLAAVAESIIRY 796


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,581
Number of Sequences: 2352
Number of extensions: 13202
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59711994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)