Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_E01
(611 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86473-1|BAA20377.1| 412|Caenorhabditis elegans 3-keto-acyl-CoA... 157 4e-39
AL023847-7|CAA19548.1| 412|Caenorhabditis elegans Hypothetical ... 157 4e-39
U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa ... 48 7e-06
U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical pr... 45 4e-05
Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical p... 42 5e-04
M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical pr... 34 0.092
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 31 0.86
AC024765-2|AAF60523.3| 345|Caenorhabditis elegans Hypothetical ... 28 4.6
U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical pr... 27 8.0
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 27 8.0
AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical ... 27 8.0
AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effe... 27 8.0
AF038612-1|AAB92043.1| 348|Caenorhabditis elegans Hypothetical ... 27 8.0
>D86473-1|BAA20377.1| 412|Caenorhabditis elegans 3-keto-acyl-CoA
thiolase protein.
Length = 412
Score = 157 bits (382), Expect = 4e-39
Identities = 71/116 (61%), Positives = 90/116 (77%), Gaps = 2/116 (1%)
Frame = +3
Query: 243 KVFVVGVGMTNFIKPST--GGDYPELGKEAVLAALADARIKYDDIQQAVCGYVFGDSTCG 416
KV++VGVGMT F KP + G DYP++ KEAV AL D ++KY DIQQA GY+FG + CG
Sbjct: 7 KVYIVGVGMTKFCKPGSVPGWDYPDMVKEAVTTALDDCKMKYSDIQQATVGYLFGGTCCG 66
Query: 417 QRVLYQVGMTGIPIYNVNNNCSTGSNALFLSKQLIEGGICDVALAVGFEKMSPGAL 584
QR LY+VG+TGIPI+NVNN C++GS+ LFL KQ+IE G DV L GFE+M+PG+L
Sbjct: 67 QRALYEVGLTGIPIFNVNNACASGSSGLFLGKQIIESGNSDVVLCAGFERMAPGSL 122
>AL023847-7|CAA19548.1| 412|Caenorhabditis elegans Hypothetical
protein Y57A10C.6 protein.
Length = 412
Score = 157 bits (382), Expect = 4e-39
Identities = 71/116 (61%), Positives = 90/116 (77%), Gaps = 2/116 (1%)
Frame = +3
Query: 243 KVFVVGVGMTNFIKPST--GGDYPELGKEAVLAALADARIKYDDIQQAVCGYVFGDSTCG 416
KV++VGVGMT F KP + G DYP++ KEAV AL D ++KY DIQQA GY+FG + CG
Sbjct: 7 KVYIVGVGMTKFCKPGSVPGWDYPDMVKEAVTTALDDCKMKYSDIQQATVGYLFGGTCCG 66
Query: 417 QRVLYQVGMTGIPIYNVNNNCSTGSNALFLSKQLIEGGICDVALAVGFEKMSPGAL 584
QR LY+VG+TGIPI+NVNN C++GS+ LFL KQ+IE G DV L GFE+M+PG+L
Sbjct: 67 QRALYEVGLTGIPIFNVNNACASGSSGLFLGKQIIESGNSDVVLCAGFERMAPGSL 122
>U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa
thiolase protein 1 protein.
Length = 407
Score = 47.6 bits (108), Expect = 7e-06
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Frame = +3
Query: 240 RKVFVVGVGMT---NFIKPSTGGDYPELGKEAVLAALADARIKYDDIQQAVCGYVFGDST 410
+ F+VG T +F + PEL A+ AAL +K IQ+ G V +
Sbjct: 22 KHAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEVFLGQVC-QAN 80
Query: 411 CGQRVLYQVGM-----TGIPIYNVNNNCSTGSNALFLSKQLIEGGICDVALAVGFEKMS 572
GQ Q + + + VN CS+G A+ L+ Q I+ G D A+ G E MS
Sbjct: 81 AGQAPARQAALGAGLDLSVAVTTVNKVCSSGLKAIILAAQQIQTGHQDFAIGGGMESMS 139
>U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical
protein T02G5.4 protein.
Length = 460
Score = 45.2 bits (102), Expect = 4e-05
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Frame = +3
Query: 240 RKVFVVGVGMT---NFIKPSTGGDYPELGKEAVLAALADARIKYDDIQQA------VCGY 392
+ F+VG T +F + PEL A+ AAL +K IQ+A VC
Sbjct: 100 KDAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEANVFLGQVCHA 159
Query: 393 VFGDSTCGQRVLYQVGMTGIPIYNVNNNCSTGSNALFLSKQLIEGGICDVALAVGFEKMS 572
G ++ Q L + + VN S+G A+ L+ Q I+ G D+A+ G E MS
Sbjct: 160 NAGQASARQAALGAGLDLSVAVTTVNKGWSSGMKAIILAAQQIQTGHQDLAIGGGMESMS 219
>Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical
protein F53A2.7 protein.
Length = 394
Score = 41.5 bits (93), Expect = 5e-04
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
Frame = +3
Query: 246 VFVVGVGMT---NFIKPSTGGDYPELGKEAVLAALADARIKYDDIQQAVCGYVFGDSTCG 416
VF+VG T F G +LG A AAL A + D + + G V S G
Sbjct: 6 VFIVGAKRTAFGTFGGKLKGLSATDLGVVASQAALKHANVGADAVDHVIFGNVVASSRDG 65
Query: 417 QRVLYQVGM-TGIP----IYNVNNNCSTGSNALFLSKQLIEGGICDVALAVGFEKMS 572
+ +G+ +G+P VN C +G A+ + Q I+ G ++ LA G E MS
Sbjct: 66 IYLSRHIGLKSGVPQNVGALTVNRLCGSGFQAVVNAAQAIKLGESNIVLAGGTENMS 122
>M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical
protein B0303.3 protein.
Length = 448
Score = 33.9 bits (74), Expect = 0.092
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Frame = +3
Query: 231 NMPRKVFVVGVGMTNFIKPSTGGDYP--ELGKEAVLAALADARIKYDDIQQAVCGYVFGD 404
NMP V V V + + D +L KEA+ A + ++ Y+ + +CG V +
Sbjct: 22 NMPNIVLVDAVRTPFVVSGTVFKDLMAVDLQKEAIKALVEKTKLPYEQLDHIICGTVIQE 81
Query: 405 ---STCGQRVLYQVGMTG-IPIYNVNNNCSTGSNALFLSKQLIEGGICDVALAVGFEKMS 572
S + G+ IP + V C + + A+ ++ G + +A G E +S
Sbjct: 82 CKTSNIAREAALLAGVPDKIPAHTVTLACISSNVAMTTGMGMLATGNANAIIAGGVELLS 141
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical
protein F32H2.5 protein.
Length = 2586
Score = 30.7 bits (66), Expect = 0.86
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 405 STCGQRVLYQVGMTGIPIYNVNNNCSTGSNALFLSKQLIEGGICDVALAVG 557
S R+ Y + G P ++V+ CS+ AL L+ I G CD A+ G
Sbjct: 147 SMFSNRISYTFDLQG-PSFSVDTACSSSLLALQLAVDSIRQGQCDAAIVAG 196
>AC024765-2|AAF60523.3| 345|Caenorhabditis elegans Hypothetical
protein Y39A3CR.6 protein.
Length = 345
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -2
Query: 538 SHMPPSMSCLDKNSAFEPVEQLLFTL*IGIPVIPTWYKTRWPQVESP 398
S M SM+C K SA +P E +L + +P +P P + SP
Sbjct: 163 SFMAKSMTCRIKESAEKPTETVLVCVPDELPALPVTVPKAPPILASP 209
>U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical
protein C53B7.2 protein.
Length = 195
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -3
Query: 480 NSCCSHCR*VY-RSYQPGTRLAGRKSNHRIHNHRLLAEC 367
N C VY R+ + L+ S HR H+HR EC
Sbjct: 104 NGYCGAASGVYTRTVVSSSSLSSSSSGHRHHSHRSQGEC 142
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 462 NVNNNCSTGSNALFLSKQLIEGGICDVALAVGFE 563
NVN C GSN S Q++ C +++GF+
Sbjct: 491 NVNGYCQGGSNGQCNSNQVLINNQCYNTVSIGFQ 524
>AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical
protein Y2H9A.1 protein.
Length = 898
Score = 27.5 bits (58), Expect = 8.0
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +3
Query: 195 FVKRYSTKTNFTNMPRKVFVVGVGMTNFIKPSTGGDYPELGKEAVLAALADARIKYDDIQ 374
FV KT FT++PRK V T + G P+ + V+ + D+
Sbjct: 87 FVDTDYPKTTFTHVPRKFLSVS-PFTPIEADAEGEFLPDADSKCVICHEEKDKTGKSDL- 144
Query: 375 QAVC-GYVFGDSTCGQRVLYQVGM 443
C GY+ G+ G+R+L + M
Sbjct: 145 -ITCHGYINGEMDDGKRLLGNIPM 167
>AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effect
sterile 4 protein.
Length = 898
Score = 27.5 bits (58), Expect = 8.0
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +3
Query: 195 FVKRYSTKTNFTNMPRKVFVVGVGMTNFIKPSTGGDYPELGKEAVLAALADARIKYDDIQ 374
FV KT FT++PRK V T + G P+ + V+ + D+
Sbjct: 87 FVDTDYPKTTFTHVPRKFLSVS-PFTPIEADAEGEFLPDADSKCVICHEEKDKTGKSDL- 144
Query: 375 QAVC-GYVFGDSTCGQRVLYQVGM 443
C GY+ G+ G+R+L + M
Sbjct: 145 -ITCHGYINGEMDDGKRLLGNIPM 167
>AF038612-1|AAB92043.1| 348|Caenorhabditis elegans Hypothetical
protein F13B6.1 protein.
Length = 348
Score = 27.5 bits (58), Expect = 8.0
Identities = 23/108 (21%), Positives = 42/108 (38%)
Frame = +3
Query: 189 DVFVKRYSTKTNFTNMPRKVFVVGVGMTNFIKPSTGGDYPELGKEAVLAALADARIKYDD 368
+V + + F +P +V ++ I+ T D EL + A IKY+
Sbjct: 148 NVVIGKNQVLNGFVGLPDSKDMVQFFDSDSIEGLTNYDQLELPMDMFHFTSNSADIKYEI 207
Query: 369 IQQAVCGYVFGDSTCGQRVLYQVGMTGIPIYNVNNNCSTGSNALFLSK 512
A G G S + G G Y++NN+ +++F+ +
Sbjct: 208 TYAARKGITIGSSGLLMTDSFPTGTFGTNDYDLNNSKGVNVDSIFIPR 255
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,628,164
Number of Sequences: 27780
Number of extensions: 308119
Number of successful extensions: 719
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -