Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_E01
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.4  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   7.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.2  

>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 563 FKSYCKSYIAYATFDE 516
           FKS CK  IA+  FD+
Sbjct: 107 FKSTCKMDIAWFPFDD 122


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 324 AVLAALADARIKYDDIQQAVCGYVFGDS 407
           AVL      RI+ D + + V GYV G++
Sbjct: 222 AVLYIRIGLRIQSDSLAENVEGYVHGET 249


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
          protein protein.
          Length = 138

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 70 DKESIVTKVQLSSSFD 23
          DK++++T  QL  +FD
Sbjct: 24 DKDAVITSQQLEVNFD 39


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 563 FKSYCKSYIAYATFDE 516
           FKS CK  +A+  FD+
Sbjct: 107 FKSTCKMDVAWFPFDD 122


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 563 FKSYCKSYIAYATFDE 516
           FKS CK  IA+  FD+
Sbjct: 107 FKSTCKIDIAWFPFDD 122


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 563 FKSYCKSYIAYATFDE 516
           +KS+C+  + Y  FDE
Sbjct: 141 YKSFCEIDVEYFPFDE 156


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 227 YKYAQKSVRRRRRYDQFY 280
           + + +KSV+R + YD++Y
Sbjct: 129 HPWFKKSVQRIKPYDEYY 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,449
Number of Sequences: 438
Number of extensions: 3905
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)