Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_D24
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 247 9e-67
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 36 0.003
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 36 0.005
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 35 0.007
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 35 0.009
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 34 0.015
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 32 0.047
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 32 0.047
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 32 0.062
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 31 0.082
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 29 0.33
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 29 0.44
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 29 0.58
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 28 1.0
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 28 1.0
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 27 1.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 1.8
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 27 1.8
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 1.8
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 27 1.8
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 27 1.8
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 2.3
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 2.3
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 26 3.1
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 26 3.1
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 26 3.1
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 26 4.1
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 26 4.1
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 26 4.1
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 25 5.4
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 5.4
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 25 5.4
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual 25 7.2
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 7.2
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 25 7.2
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 25 7.2
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 25 9.5
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 25 9.5
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 25 9.5
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 247 bits (604), Expect = 9e-67
Identities = 107/141 (75%), Positives = 123/141 (87%)
Frame = +3
Query: 117 TDKLTRIAIVNADRCKPKRCRQECKKSCPLVRMGKLCIEVTPNDKIATISEELCIGCGIC 296
++ LTRIAIV+ D+C+PK+CRQEC++SCP+VR GKLCIEV P D+IA ISE LCIGCGIC
Sbjct: 2 SESLTRIAIVSEDKCRPKKCRQECRRSCPVVRTGKLCIEVNPTDRIAFISETLCIGCGIC 61
Query: 297 VKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGPNGIGKSTALK 476
VKKCPF AI IIN+P+NLE THRYS NSFKLHRLP PRPG+VLGLVG NGIGKSTALK
Sbjct: 62 VKKCPFGAINIINLPTNLESEVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALK 121
Query: 477 ILAGKQKPNLGRFADPPDWQE 539
IL+GK KPNLGR+ +PPDW E
Sbjct: 122 ILSGKMKPNLGRYDNPPDWAE 142
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 36.3 bits (80), Expect = 0.003
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 429 LGLVGPNGIGKSTALKILAGKQKPNLG 509
+ ++GPNG GKST +K+L G+ P +G
Sbjct: 703 IAVIGPNGAGKSTLIKVLTGELLPTVG 729
Score = 29.5 bits (63), Expect = 0.33
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +3
Query: 399 RLPIPRPGEVLGLVGPNGIGKSTALKILAGKQ 494
RL + R G GL GPNG GKST ++ + Q
Sbjct: 454 RLRLKR-GRRYGLCGPNGSGKSTLMRAIVNGQ 484
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 35.5 bits (78), Expect = 0.005
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +3
Query: 402 LPIPRPGEVLGLVGPNGIGKSTALKILAGKQKPNLGRFA 518
L +P+ L LVG NG GKST LK+L+GK G +
Sbjct: 25 LDLPKGSRTL-LVGANGAGKSTLLKLLSGKSLAKAGHIS 62
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 35.1 bits (77), Expect = 0.007
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 429 LGLVGPNGIGKSTALKILAGKQKPNLG 509
+G+VGPNG GKST LK+L + P G
Sbjct: 547 IGVVGPNGAGKSTMLKLLIEQLHPTSG 573
Score = 29.5 bits (63), Expect = 0.33
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 420 GEVLGLVGPNGIGKSTALKILAGKQ 494
G GL G NGIGKST L+ L+ ++
Sbjct: 208 GRRYGLTGRNGIGKSTLLRALSRRE 232
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 34.7 bits (76), Expect = 0.009
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 429 LGLVGPNGIGKSTALKILAGKQKPNLGRFADPPD 530
+ ++GPNG GKST +K+L G+ P G+ P+
Sbjct: 722 VAILGPNGAGKSTLIKVLIGEVIPQEGKVFKHPN 755
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 33.9 bits (74), Expect = 0.015
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 429 LGLVGPNGIGKSTALKILAGKQKPNLG 509
+ LVGPNG GK+T +K++ K +P+ G
Sbjct: 623 VALVGPNGAGKTTLIKLILEKVQPSTG 649
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 420 GEVLGLVGPNGIGKSTALKILA 485
G GL+ PNG GKST L +A
Sbjct: 301 GRRYGLIAPNGSGKSTLLHAIA 322
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 32.3 bits (70), Expect = 0.047
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 408 IPRPGEVLGLVGPNGIGKSTALKIL 482
+ +PG+V+ LVG +G GKST ++IL
Sbjct: 606 VAQPGKVIALVGESGGGKSTIMRIL 630
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 32.3 bits (70), Expect = 0.047
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +3
Query: 336 IPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGPNGIGKSTALKILAGKQKPNLGRF 515
IP H+ ++ K L +L + GP+G GKSTA+++LA + +L +
Sbjct: 77 IPQKAADLAVHKSKISAIKQWMLTDSLESRLLLICGPSGCGKSTAVQVLAKELGYSLIEW 136
Query: 516 ADPPDWQE 539
+P + +E
Sbjct: 137 LNPMNLKE 144
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 31.9 bits (69), Expect = 0.062
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 360 TTHRYSKNS-FKLHRLPIPRPGEVL--GLVGPNGIGKSTALKILAGKQKPNLGRFADPP 527
T YSK + R + RPG L G+VG IGKST +IL K NLG A+ P
Sbjct: 22 TRRYYSKQKDISIVRQRLGRPGNHLKIGIVGMPNIGKSTLFQILT---KTNLGNPANYP 77
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 31.5 bits (68), Expect = 0.082
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 378 KNSFKLHRLPIPRP-GEVLGLVGPNGIGKSTALKILAGKQKPNLG 509
+N F L + + P GE++ ++GP+G GKST + +L P G
Sbjct: 447 ENLFSLINVSVFIPFGELVHIIGPSGSGKSTFISLLLRYFSPTYG 491
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 29.5 bits (63), Expect = 0.33
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 357 HTTHRYSKN-SFKLHRLPIP-RPGEVLGLVGPNGIGKSTALKILAGKQKPNLGR 512
H + +Y ++ SF L+ + I P E +G+VG G GKST L +P G+
Sbjct: 1230 HYSAKYREDLSFALNNINIEISPREKIGIVGRTGAGKSTLAMALFRIIEPTEGK 1283
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 29.1 bits (62), Expect = 0.44
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 375 SKNSFKLHRLPIPRPGEVLGLV-GPNGIGKSTALKILAGKQKPNLGRFADP 524
S F L L I P L +V GP G GKS+ + L G+ N G + P
Sbjct: 625 SPGDFCLRDLNIVFPRNKLSIVIGPTGSGKSSLISALLGELSLNKGSYNLP 675
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 28.7 bits (61), Expect = 0.58
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 417 PGEVLGLVGPNGIGKSTALKILA 485
PG++ L+G +G GK+T L +LA
Sbjct: 910 PGKLTALMGESGAGKTTLLNVLA 932
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 1.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 264 SEELCIGCGICVKKCPFDAITI 329
+EEL +G G C+ PFD +T+
Sbjct: 239 NEELLMGYGFCLPDNPFDTVTL 260
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 420 GEVLGLVGPNGIGKSTALKILAGKQKPNLGRFA 518
G+++ LVGP G+GK++ K +A RF+
Sbjct: 571 GKIMCLVGPPGVGKTSVGKSIASALNREFFRFS 603
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/26 (34%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -3
Query: 158 TIRIYYS-DTGKFICFLIISFSGHHC 84
T+++YY+ D+G ++C ++ F+G C
Sbjct: 589 TVKLYYAFDSGDYLCLVMDYFNGGDC 614
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 423 EVLGLVGPNGIGKSTALKILAG 488
E L LVG G GK+T +++LAG
Sbjct: 468 EPLLLVGETGTGKTTTIQLLAG 489
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +3
Query: 429 LGLVGPNGIGKSTALKILAGKQKP---NLGRFA 518
+ +VG NG GKST L ++ G P N+ R++
Sbjct: 419 VAIVGKNGTGKSTLLNLITGLLIPIEGNVSRYS 451
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 357 HTTHRYSKN-SFKLHRLPIP-RPGEVLGLVGPNGIGKSTALKILAGKQKPNLG 509
H + RY +N L+ + + +P E +G+VG G GKST L +P G
Sbjct: 1228 HYSVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTLALFRLIEPTSG 1280
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 408 IPRPGEVLGLVGPNGIGKSTALKILAGKQKPNLG 509
+ R GE+ +VG G+GKS+ L+ G + + G
Sbjct: 605 VARRGELCCIVGKVGMGKSSLLEACLGNMQKHSG 638
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 432 GLVGPNGIGKSTALKILAGKQKPNL 506
G++GP +G +TA + G QKP L
Sbjct: 129 GMIGPLAVGLNTAKGLAVGLQKPLL 153
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 417 PGEVLGLVGPNGIGKSTALKILAGKQKPNLGR-FADPPD 530
PG + +V P+G GKST ++L P+ G+ AD D
Sbjct: 509 PGTNVAIVAPSGGGKSTISQLLLRFYAPSSGKILADGVD 547
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 414 RPGEVLGLVGPNGIGKSTALKIL 482
+PG+ + VG +G GKST + ++
Sbjct: 1145 KPGQFVAFVGSSGCGKSTTIGLI 1167
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 420 GEVLGLVGPNGIGKSTALKILAGKQKPNLGR-FADPPD 530
G++ LVG +G GKST + ++ P G+ F D D
Sbjct: 448 GKITALVGASGSGKSTIIGLVERFYDPIGGQVFLDGKD 485
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +3
Query: 417 PGEVLGLV-GPNGIGKSTALKIL 482
PG L L+ GPNG GKST + +
Sbjct: 31 PGPYLNLIIGPNGTGKSTIVSAI 53
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 378 KNSFKLHRLPIPRP-GEVLGLVGPNGIGKSTALKILAGKQK 497
KN++ + P P G+ LG++G GIGK+ A + A K
Sbjct: 141 KNNWNANCKPSHDPEGKTLGILGLGGIGKTMAKRARAFDMK 181
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 42 ANVGKVSPTFALLSAVMSRKRDNEETDKLTRIAI 143
AN K+ + L A+ S + D+E DKL +++I
Sbjct: 105 ANSSKIYESMIALKALNSSQNDSEVKDKLEKLSI 138
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 441 GPNGIGKSTALKILAGKQKPNLG 509
GP+G+GKST LK L LG
Sbjct: 25 GPSGVGKSTLLKRLLKDHGDKLG 47
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 261 WSLFYHWVL-LRCTVCPYAQVGNSSCIPVDIFL 166
W F W+ + CT+ Y V +S+ I V IFL
Sbjct: 402 WRPFSFWLFSIFCTIAAYYLVSSSTKITVFIFL 434
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 429 LGLVGPNGIGKSTALKILA 485
+ L+G NG+GKST L +A
Sbjct: 345 ISLIGVNGVGKSTTLAKIA 363
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 402 LPIPRPGEVLGLVGPNGIGKSTALKILAGKQK 497
LP + GLVG +GKS+ + L G +K
Sbjct: 295 LPDGKTKMTFGLVGYPNVGKSSTINALVGSKK 326
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 282 QYTVLQRWSLFYHWVLLRCTVCPYAQVGNSSCIPVDI 172
+Y +L++ S+ Y + + T G SSCIPV+I
Sbjct: 49 RYELLRKSSIRYTILQIGITFIYLQNNGKSSCIPVNI 85
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 417 PGEVLGLVGPNGIGKSTALKIL 482
P ++ ++GP G GKST +K L
Sbjct: 73 PPVIVAVMGPPGTGKSTLIKSL 94
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 297 VKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGPNGIGKSTAL 473
+ K D TI IP+N H H++ +S ++ ++ + R V G +G S A+
Sbjct: 269 IAKAKIDT-TIAVIPANAFHHLVHKFPNSSAQIVQVILTRFQRVTFSTGYEYLGLSDAI 326
>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 227 AQFAHTHKWATLLAFLSTSFWF 162
A+ +HT+ WA L++ ++ FWF
Sbjct: 19 AESSHTNNWAVLIS--TSRFWF 38
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 328 SSIFHQIWRNTPLIVIPRIL--SNFTGYQFHVLE-KCLG*LVQTVLASP 465
SSIF +W ++ L ++P+ L + F ++ C+G V+T +P
Sbjct: 323 SSIFFWVWCHSLLYIVPKTLPIKPLSSLLFVLISFTCIGLYVRTAFQNP 371
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 7.2
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 321 ITIINIPSNLEKHTT---HRYSKNSFKLHRLPIPRPGEVLGLVGPNGIGKSTALKILAGK 491
++ + + SN++K T H + +NS IP L L GP G GK++ L LAG+
Sbjct: 207 LSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYL-LYGPPGSGKTSFLYALAGE 265
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 420 GEVLGLVGPNGIGKSTALKIL 482
G+ +G++G IGKS A KIL
Sbjct: 159 GKRVGIIGMGAIGKSFAQKIL 179
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 426 VLGLVGPNGIGKSTALKIL 482
+LG+ GP G GKST L
Sbjct: 27 ILGISGPQGSGKSTLASAL 45
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 420 GEVLGLVGPNGIGKSTALKIL 482
G + L+GP GK++ LKIL
Sbjct: 106 GPCVCLIGPRSCGKTSVLKIL 126
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 414 RPGEVLGLVGPNGIGKSTALKILAGKQ 494
R G + ++GP+ GKS+ + +LA ++
Sbjct: 237 RKGINVAILGPSNAGKSSLINLLANRR 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,555
Number of Sequences: 5004
Number of extensions: 54163
Number of successful extensions: 206
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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