Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D23
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    26   2.6  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   2.6  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   3.4  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   7.8  
SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   7.8  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   7.8  

>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 108 YIFNTVNSKEYISMKMLNRY 49
           Y+ N  N  +YIS+K LN Y
Sbjct: 403 YVKNPANDVQYISIKALNEY 422


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 130 TSVPRHFCVPPNFKSVPP 183
           T+ P+H+CV PN   + P
Sbjct: 39  TTAPKHYCVRPNSGKIEP 56


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 299 RHTKKKIKIIYLLQHTA*IFFFLNDII 219
           R  K+K KII+ L + + IF FLN ++
Sbjct: 21  RVAKEKYKIIHRLLYISIIFLFLNYVV 47


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 367 SIYQ*FSTFFFVAEHILTISK 305
           S+YQ +S+ F V+ H+ +ISK
Sbjct: 82  SVYQSYSSTFNVSNHVPSISK 102


>SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 463 FVLKLLLKITHYFTQTLLIH 404
           F LKL+ KI  +FTQT  ++
Sbjct: 156 FRLKLVFKIAFFFTQTTFLN 175


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = +2

Query: 71   EIYSFEFTVLNIYV-----YTSDSLPLCRGTFVCRQISKVCRQILQIYN--NVNIIKLYH 229
            +I S  FT+ ++ +     Y S    LC GTF C  +   C  +L+  N  + ++ KL+ 
Sbjct: 894  DILSSVFTINDMLIDEMTAYLSKKESLCSGTFSC--LLACCNSVLRTQNLTSESLNKLHI 951

Query: 230  LK 235
            LK
Sbjct: 952  LK 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,571
Number of Sequences: 5004
Number of extensions: 38019
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)