Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D23
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0766 - 22982606-22983288,22984352-22984706                       28   3.4  
04_04_1597 - 34690787-34691302,34691627-34691731                       28   3.4  
09_04_0504 + 18180321-18181013                                         27   7.9  
08_02_1082 + 24225592-24226422                                         27   7.9  
03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298     27   7.9  

>12_02_0766 - 22982606-22983288,22984352-22984706
          Length = 345

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +3

Query: 267 VNNFYLFLCV--PPNFEIVKICSATKKKVENHWYI 365
           V   YL LC+  PP +E +KICS   +     W +
Sbjct: 162 VKKTYLALCIGYPPAWEKIKICSGHGRSKHGAWRV 196


>04_04_1597 - 34690787-34691302,34691627-34691731
          Length = 206

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 109 CIYQ*FSTSVPRHFC 153
           C Y  +STS PRHFC
Sbjct: 62  CYYNNYSTSQPRHFC 76


>09_04_0504 + 18180321-18181013
          Length = 230

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 109 CIYQ*FSTSVPRHFC 153
           C Y  ++TS PRHFC
Sbjct: 55  CYYNNYNTSQPRHFC 69


>08_02_1082 + 24225592-24226422
          Length = 276

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 109 CIYQ*FSTSVPRHFC 153
           C Y  ++TS PRHFC
Sbjct: 74  CYYNNYNTSQPRHFC 88


>03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298
          Length = 439

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 109 CIYQ*FSTSVPRHFC 153
           C Y  ++TS PRHFC
Sbjct: 46  CYYNNYNTSQPRHFC 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,678,795
Number of Sequences: 37544
Number of extensions: 187541
Number of successful extensions: 343
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)